FC921658

Overview
NameFC921658
Unique NameFC921658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.446e-65
Identity = 127/235 (54.04%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFC-GGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KTTCSESSKTGFMIF 688
            SDSTI+MA+YTVAH+L  GD+ G       I P QMT +VW+++F    P+P++  IP   L+++KQEFE+WYP DLR SGKDLI NHL++ IYNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QA+++FSAD  R +LADAGD V+DANFV  +A+ GILRL   + W++E+LA  SSLR+GP  ++ DRVF +E+N  +  TDQ+Y K    E+ KTGF  F
Sbjct:  597 SDSTIYMAFYTVAHLLQGGDLNGQAESPLGIRPQQMTKDVWDYVFFKDAPFPKTQ-IPKEKLDQLKQEFEFWYPVDLRASGKDLIPNHLSYYIYNHVAMWPEQSDKWPVSVRANGHLLLNSEKMSKSTGNFLTLSQAVDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMLASCSSLRSGPADSFNDRVFASEMNAGIIKTDQNYEKMMFKEALKTGFFEF 830          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.807e-65
Identity = 117/219 (53.42%), Postives = 161/219 (73.52%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTGS--IEPSQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKTT 652
            +DSTI+MAYYT+ H+LH  D+YG   G+  I+P QMT EVW+ +F   P P++++I    L R+ +EF+Y+YPFD+R SGKDL+ NHLTFC+Y HTAI  +++WP+G R NGH+++N EKMSKSTGNF TL +A ++F ADATR +LADAGD VDDANF   +AN+ ILRL  + AW +E++    +LRTG P  + D+VFENEIN  +E + + +  T
Sbjct:  619 TDSTIYMAYYTICHLLHS-DVYGKVPGALNIKPEQMTPEVWDHVFRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLVPNHLTFCLYTHTAIFDEKYWPKGIRANGHLLMNGEKMSKSTGNFMTLHEATKKFGADATRLALADAGDTVDDANFEEALANSAILRLYTQEAWCKEMMENLDNLRTG-PYNFHDKVFENEINQLIESSREAFSAT 835          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.584e-65
Identity = 126/235 (53.62%), Postives = 169/235 (71.91%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFCG-GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KTTCSESSKTGFMIF 688
            SDSTI+MA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P++  I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QAI++FSAD  R +LADAGD V+DANFV  +A+ GILRL   + W++E++A   SLR+GP ST+ DRVF +E+N  +  TDQ+Y K    E+ KTGF  F
Sbjct:  595 SDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQ-IAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEF 828          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 125/235 (53.19%), Postives = 169/235 (71.91%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFCG-GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRH--WPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHY-KTTCSESSKTGFMIF 688
            SDSTI+MA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P++  I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGNF TL QAI++FSAD  R +LADAGD V+DANFV  +A+ GILRL   + W++E++A   SLR+GP +T+ DRVF +E+N  +  TDQ+Y K    E+ KTGF  F
Sbjct:  595 SDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQ-IAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPANTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEF 828          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.306e-60
Identity = 113/223 (50.67%), Postives = 153/223 (68.61%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFCGGPYPE----SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKTT 652
            SDST++MAYYTVAH LH+ D++G   G  +I   QM DEVW++IFC     +     S IP   L+ M++EF+Y+YP D+RVSGKDLI NHLTF +YNH A+  + +WP+  R NGH+ LN EKMSKSTGNF TL   ++++ ADA R +LADAGDG+ D+NFV D+A+  ILR      W+EE L  + SLRTG  +++ D +F+NE+N  V    +HY+ T
Sbjct:  635 SDSTVYMAYYTVAHWLHR-DLFGREKGKGNIGADQMIDEVWDYIFCRTELSDHLVTKSGIPKETLDSMRREFQYFYPLDIRVSGKDLIPNHLTFWLYNHIALFPREYWPKSVRANGHLQLNGEKMSKSTGNFMTLDDVVKKYGADAARVALADAGDGISDSNFVEDVADNTILRFYTNKEWIEETLK-DESLRTGELNSFQDALFDNEMNALVNEARKHYEET 855          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.385e-58
Identity = 118/234 (50.43%), Postives = 159/234 (67.95%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFCGGPYPESSNIP--SSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIM--SQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAV-ESSLRTGPPSTYADRVFENEINIAVEMTDQHYK-TTCSESSKTGF 679
            SDSTI+ AYYTVAH+L +G   GS  G   I+  QMTD  W ++F G  Y +S  +P     L  +++EF YWYP D+R SGKDLI NHLT+ ++NH AI       WP+G R NGH++LN+EKMSKSTGNF TL++AIE+FSAD  R SLADAGDG++DANFV+ +A+  ILRL   I W++E++   ++ L       +ADRVF NE+N  +  T+Q+Y+ T   ++ KTGF
Sbjct:  596 SDSTIYNAYYTVAHLLQQGAFDGSVVGPAGIKADQMTDASWSYVFLGEIY-DSKTMPVEEEKLKSLRKEFMYWYPIDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGNFMTLEEAIEKFSADGMRLSLADAGDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAGLLRKDAKKFADRVFANEMNSLIAATEQNYEATNFKDALKTGF 828          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.031e-58
Identity = 110/219 (50.23%), Postives = 146/219 (66.67%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTGS--IEPSQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKTT 652
            SDSTI+MA+YTVAH+L +GD+ GS  GS  I P QMT   W+++  G PYPE   +    L  +K+EF YWYP D+RVSG DLIQNHLTF +Y H AI  ++  P+  R NG + LN EKMSKSTGNF TL  ++ +FSAD TR +LADAGD ++DANFV   A T +L+L  +I W++E L      R+GP     D +FE+EIN  +  +++ Y+ T
Sbjct:  593 SDSTIYMAFYTVAHLL-QGDVNGSKPGSAGITPKQMTSACWDYVLMGKPYPEGCEVSEEKLKELKKEFTYWYPVDIRVSGADLIQNHLTFFLYTHAAIFEKKFQPKSIRANGFVNLNGEKMSKSTGNFLTLVDSVAKFSADGTRVALADAGDSIEDANFVDQTAVTSLLKLHTQIQWVQETLDSIDKFRSGPLDRIQDTIFESEINNIIVESEKAYQKT 810          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.456e-57
Identity = 112/219 (51.14%), Postives = 150/219 (68.49%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTG--SIEPSQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKTT 652
            SDSTI+ ++YT+AH+L K D YG+  G   I   QMTDEV+++IF      +++NIP   L ++++EFEY+YP D+ +SGKDLI NHLTF IY H A+  ++ WP+G R NGH+MLN+ KMSKSTGNF TL+Q +E+F ADA R + ADAGD V+DANF    AN  ILRL     W EE+   ES+LRTG  + + D  FE+E+N  +E T + Y  T
Sbjct:  611 SDSTIYQSFYTIAHLLFK-DYYGNEIGPLGISADQMTDEVFDYIFQHQDDVKNTNIPLPALQKLRREFEYFYPLDVSISGKDLIPNHLTFFIYTHVALFPKKFWPKGIRANGHLMLNNSKMSKSTGNFMTLEQTVEKFGADAARIAFADAGDTVEDANFDESNANAAILRLFNLKEWAEEI-TKESNLRTGEITDFFDIAFEHEMNALIEKTYEQYALT 827          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYL_AERPE (Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 94/236 (39.83%), Postives = 139/236 (58.90%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTGSIEPSQMTDEVWEFIFCG----GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFS--LADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVESSLRTGPPS----TYADRVFENEINIAVE-----MTDQHYKTTCSES 664
            SDSTI+MAYYT+A      + YG     +EP  +T EV++++F G    G     S IP  +L  M++EF YWYP D+R+SGKDLI NHL F I++HTAI  +  WPR    NG +++  EKMSKS GNF  L+QA++ + ADATR++  LA A  G+DDANF   +A++ +  L++ + ++ E          G P+     + DR FE+ +N  +      M + ++KT   E+
Sbjct:  521 SDSTIYMAYYTIAKYTQHPEKYG-----VEPEMLTPEVFDYVFLGAGDPGEVSRRSGIPQGLLEEMRREFLYWYPLDMRISGKDLIPNHLVFFIFHHTAIFPRELWPRAIGVNGWVLVAGEKMSKSKGNFILLRQALDWWGADATRWAEVLAGADSGLDDANFEPSVADSAVSLLSQWLDFVRE--------NYGRPARREERWVDRWFESRLNSTIARVTRLMEEANFKTALVEA 743          
BLAST of FC921658 vs. ExPASy Swiss-Prot
Match: SYLC_ENCCU (Probable leucyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0280 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.465e-40
Identity = 92/235 (39.15%), Postives = 136/235 (57.87%), Query Frame = 2
Query:    2 SDSTIHMAYYTVAHMLHKGDMYGSTTGSIEPS-QMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDIANTGILRLTKEIAWMEEVLAVES-------SLRTGPPSTYADRVFENEINIAV-EMTDQHYKTTCSESSKTGF 679
            SDSTI+MA YT  H L++ D+ G     + PS +++D+VW +IF      E       IL+  ++ F Y+YP DLRV GKDL++NHL F ++NH A+  ++HWP+    NGH+MLNSEKMSKS+GN+ T+ +++++F   +TR  LA  GDG +DANFV   AN  +L+L   +  +EE+    S        ++      +ADR     I++ V   T  H   T  +  K GF
Sbjct:  429 SDSTIYMAMYTFKHFLYR-DLEGKD--ELFPSNRLSDDVWNYIFLNRSITEDLAPYEEILSNCRESFNYFYPIDLRVGGKDLLKNHLIFFLFNHVALFEEKHWPKRMFTNGHLMLNSEKMSKSSGNYMTVDESLDKFGVSSTRMCLAVCGDGNEDANFVESNANAFVLKLYSYVKMIEELCTGRSLNPCILDLMKGYGEMGFADRFLMQTISMNVAHATRAHEDMTYRDVVKYGF 660          
The following BLAST results are available for this feature:
BLAST of FC921658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SYLC_MOUSE4.446e-6554.04Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_SCHPO5.807e-6553.42Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_HUMAN7.584e-6553.62Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_PONAB1.689e-6453.19Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_NEUCR4.306e-6050.67Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_CAEEL1.385e-5850.43Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYLC_DICDI4.031e-5850.23Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_YEAST4.456e-5751.14Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYL_AERPE5.847e-4139.83Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS... [more]
SYLC_ENCCU6.465e-4039.15Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]

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Properties
Property NameValue
Genbank descriptionC32107H01EF RVDevelopN Citrus clementina cDNA clone C32107H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921658 ID=FC921658; Name=FC921658; organism=Citrus clementina; type=EST; length=693bp
ATCAGATTCAACCATTCATATGGCTTACTACACAGTAGCCCACATGTTAC
ATAAGGGAGACATGTATGGGAGTACTACTGGTTCAATAGAACCTAGTCAA
ATGACTGATGAGGTCTGGGAATTTATTTTCTGTGGTGGCCCATATCCAGA
ATCATCTAATATCCCATCATCTATCCTTAACAGGATGAAGCAGGAGTTTG
AATATTGGTATCCATTTGATCTTCGAGTCTCTGGTAAGGACCTCATCCAG
AACCACTTAACTTTTTGCATTTATAACCACACAGCAATCATGTCCCAGCG
CCACTGGCCTCGTGGATTTAGGTGTAATGGTCACATTATGCTTAATTCTG
AGAAGATGTCCAAGTCTACGGGGAATTTTAGGACGTTGAAGCAGGCCATT
GAGGAATTCTCTGCAGATGCCACACGATTTTCTCTGGCTGATGCTGGAGA
TGGTGTAGATGATGCAAATTTCGTATTTGACATTGCAAATACTGGAATCC
TTCGGCTCACCAAGGAGATTGCATGGATGGAGGAGGTACTGGCTGTGGAA
TCGTCTTTGAGAACTGGTCCACCATCTACTTATGCTGATAGGGTGTTTGA
GAACGAGATAAATATTGCTGTTGAAATGACTGATCAGCATTACAAGACTA
CATGTTCCGAGAGCTCTAAAACGGGCTTTATGATCTTCAGCTG
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