FC921668
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 4.934e-77 Identity = 137/186 (73.66%), Postives = 153/186 (82.26%), Query Frame = 3 Query: 111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVEWRTQCS 668 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VC LVLGILYG++GKVDF+VRHLSS TT FPTSW+FS Q + QCS Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQFSNNQPCIGNTARQCS 186
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2) HSP 1 Score: 284.648 bits (727), Expect = 3.198e-76 Identity = 135/186 (72.58%), Postives = 153/186 (82.26%), Query Frame = 3 Query: 111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVEWRTQCS 668 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VC LVLGILYG++GKVDF+VRHL+S T+ FPTSW+FS Q + QCS Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQFSNTQPCIGNTARQCS 186
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.879e-68 Identity = 130/187 (69.52%), Postives = 146/187 (78.07%), Query Frame = 3 Query: 111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSW-EFSGGQHVLVEWRTQCS 668 MGDFN +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS FP S+ FS GQ + QC+ Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCA 187
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20 Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 177 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCTLVLGILYGL 551 ++YL+ +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+ G PM LW+ +YI+ AV + PFAMF+YE ++ D + G +I A ++ T+VL + +G+ Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFGV 139
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19 Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 177 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCTLVLGILYGL 551 ++YL+ +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN +G PM LW+ +YI AV + PFAMF+YE ++ D G +I A ++ T+VL + +G+ Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFGV 139 The following BLAST results are available for this feature:
BLAST of FC921668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921668 ID=FC921668; Name=FC921668; organism=Citrus clementina; type=EST; length=685bpback to top |