FC921687

Overview
NameFC921687
Unique NameFC921687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921687 vs. ExPASy Swiss-Prot
Match: ORC6_ARATH (Origin recognition complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.819e-69
Identity = 129/202 (63.86%), Postives = 161/202 (79.70%), Query Frame = 3
Query:   33 MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFRDRFTAALPASRKTSADFSRPVFTAVAFYXXXXXXXXXXXXXXXIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELK 638
            MD+SDI +KL L ++K LIRKAAEIRRLCD QFDSSIIGVGE+CKAVICLE+AA+R  +IFDR+ A+KLSGMSEKAY+RSFNSLQN IG K +L++REL ++FGC+R+I  VQ  LS +++RF A+LPASR+ +ADF+RPVFTA AFY               IEVCGTSE+EF+ VST+M DLC D  GI+KEKKD +++K
Sbjct:    1 MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATRLQIIFDRQAAVKLSGMSEKAYSRSFNSLQNVIGIKIKLNVRELAVQFGCVRVIKSVQNVLSSYKERFLASLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGTSESEFSCVSTSMTDLCFDCVGISKEKKDAKDVK 202          
BLAST of FC921687 vs. ExPASy Swiss-Prot
Match: ORC6_HUMAN (Origin recognition complex subunit 6 OS=Homo sapiens GN=ORC6L PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   48 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFRDRFTAALPASRKTSADFSRPVFTAVA 470
            +A +LGL++   ++RKA E  RL  V+         E   AV+CL+LAAS      DR   IKLSG++++ Y     S +  +G  + + IR+L ++F CI  + +  K L      + ++LP +++   D SRP+FT+ A
Sbjct:    9 LAPRLGLAEP-DMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMKCPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILK----SYESSLPQTQQVDLDLSRPLFTSAA 144          
BLAST of FC921687 vs. ExPASy Swiss-Prot
Match: ORC6_BOVIN (Origin recognition complex subunit 6 OS=Bos taurus GN=ORC6L PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   48 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFRDRFTAALPASRKTSADFSRPVFTAVA 470
            +A +LG+++ ++++RKA E  RL  V+         E   AV+CL+LAAS      DR   IKLSG+++K Y     S +  +G  + + IR+L ++F C   + L  K L      + ++LP +++   D SRP+FT  A
Sbjct:    9 LAPRLGIAE-QEVLRKAEEYLRLSRVKCVGLSARTTETSNAVMCLDLAASCMKCPLDRAYLIKLSGLNKKMYQSCLKSFECLLGLNSNIGIRDLAVQFSCTEAVNLASKIL----QSYESSLPQTQQVDLDLSRPLFTTAA 144          
BLAST of FC921687 vs. ExPASy Swiss-Prot
Match: ORC6_MOUSE (Origin recognition complex subunit 6 OS=Mus musculus GN=Orc6l PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   48 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFRDRFTAALPASRKTSADFSRPVFTAVA 470
            +A +LGL++   ++RKA E  RL  V+  S      E   AVICL+LAAS      DR   I+LSG+++  Y     S +  +G  + + IR+L ++F C   + L  + L  ++    + LP +++   D SRP+FT  A
Sbjct:    9 LAPRLGLAEPS-VLRKAEEFLRLSKVKCVSLSARSSETSNAVICLDLAASCRKCPLDRAYLIRLSGLNKMMYQSCLKSFECLLGLNSNVGIRDLAVQFSCTEAVNLAAEILQSYK----SGLPETQRADLDLSRPLFTTAA 144          
The following BLAST results are available for this feature:
BLAST of FC921687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ORC6_ARATH1.819e-6963.86Origin recognition complex subunit 6 OS=Arabidopsi... [more]
ORC6_HUMAN7.505e-1533.33Origin recognition complex subunit 6 OS=Homo sapie... [more]
ORC6_BOVIN7.505e-1533.33Origin recognition complex subunit 6 OS=Bos taurus... [more]
ORC6_MOUSE8.298e-1433.33Origin recognition complex subunit 6 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionC32108B09EF RVDevelopN Citrus clementina cDNA clone C32108B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921687 ID=FC921687; Name=FC921687; organism=Citrus clementina; type=EST; length=708bp
GATTCAGATTGAGATAACCCTTTTTTTGCAAAATGGATCTCTCGGATATC
GCGAAGAAGCTAGGGCTCTCAGATTCCAAGCAGTTGATCCGGAAAGCCGC
CGAGATCCGCCGCCTCTGCGATGTCCAGTTCGACTCCTCAATTATCGGAG
TTGGAGAGGTCTGTAAGGCTGTGATCTGCCTGGAACTCGCCGCCTCAAGA
TTTGATGTAATATTTGACCGGAAAACAGCTATCAAGTTGAGCGGGATGTC
GGAGAAGGCTTATAACAGATCCTTTAATTCTCTGCAAAACAGCATTGGTT
TCAAGAATGAATTGGATATAAGAGAATTGGGGATTCGATTTGGGTGTATC
AGGCTCATTCCTTTGGTGCAAAAAGGCTTGTCTCTCTTCAGGGACCGTTT
TACTGCTGCATTACCAGCTTCCAGGAAGACAAGTGCTGACTTTTCTCGCC
CTGTCTTCACTGCTGTTGCTTTCTACTTGTGTGCAAAAAAGCATAAGCTC
AAGGTAGACAAGCTTAAGTTAATAGAAGTTTGCGGTACATCTGAAACTGA
GTTTGCTAGTGTTTCTACCACAATGAAGGATCTGTGTCATGATGTTTTTG
GAATTGCAAAAGAAAAGAAAGATCCTAGGGAGTTAAAAGCAATCGAGAAC
TTCTAGATGTGTTACCTGAAAGAGGAAAGTTGAGATGTGGAATATCTATC
TGCTGATG
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