FC921689

Overview
NameFC921689
Unique NameFC921689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921689 vs. ExPASy Swiss-Prot
Match: SPT_ARATH (Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  367 FGRSADPSVLDSSSAGLNFSNLVVGAVDSDTND----SEKGPDAL--EVPSNDT-VRTKTSSKRSRAAEVHNLSDKRRRSRINEKLKALQNLIPILTRLTKLS 654
            F    + + +  +S+G   S+  VGA  ++T++    SE+G +A+  E PS+ +   +++SSKR RAAEVHNLS+KRRRSRINEK+KALQ+LIP   +  K S
Sbjct:  132 FSGGGNNNNVQGNSSGTRVSSSSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKAS 234          
BLAST of FC921689 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.607e-11
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  370 GRSAD-PSVLDSSSAGLNFSNLVVGAVDSDTNDSEKGPDALEVPSNDTVRTKTSSKRSRAAEVHNLSDKRRRSRINEKLKALQNLIPILTRLTKLS 654
            G S D PS   S S     SN+      S+  + E G    E   +   RT   SKRSR+AEVHNLS++RRR RINEK++ALQ LIP   ++ K S
Sbjct:  288 GNSLDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPS---RTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKAS 380          

HSP 2 Score: 23.0978 bits (48), Expect = 8.607e-11
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  633 NKTDKAFMLDEA 668
            NK DKA MLDEA
Sbjct:  374 NKVDKASMLDEA 385          
The following BLAST results are available for this feature:
BLAST of FC921689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SPT_ARATH2.157e-1345.63Transcription factor SPATULA OS=Arabidopsis thalia... [more]
PIF3_ARATH8.607e-1144.79Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC32108B12EF RVDevelopN Citrus clementina cDNA clone C32108B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921689 ID=FC921689; Name=FC921689; organism=Citrus clementina; type=EST; length=668bp
CCGGGGAGAAAAAGAGAGAGAGAAAGACAGAAACAGCACCCCGGAGGCAC
AAAACCAGAGGAAGAGAAACCGAAGCGAGAGCAGCAGAAACACTCAGTCG
GCGTTGCACTTTACTAAATCAAACAAAACCATTCTCTCTCTGCTGATTTG
TTCTTTCCTTTTCCTTGTCCTTTTCTTTTTCTTTTAAGTTTAGTTTTCGA
AAATACAATTATCTTCTGCAAATTCATGGCCGATCTGTACGGAACAACGC
CGCCAACTGCCGGCCACGAACCAGAAGAAATCTCTTCATTTTTAAACCAA
TTTATACACAATTCGTCGTCGTCGTCGTCTTCTTGTTTTTTCGCTCAGCC
GGAGGATCGCCACCCTTTCGGCCGATCGGCTGACCCCTCTGTTCTTGACT
CTTCTTCTGCTGGTCTCAATTTCTCTAATTTGGTTGTCGGTGCCGTGGAC
TCCGATACCAATGATAGTGAGAAGGGTCCTGATGCATTGGAGGTGCCATC
GAACGACACGGTTCGAACTAAAACGTCGTCTAAAAGGAGCAGGGCTGCAG
AAGTTCATAATTTGTCAGATAAGAGGCGGAGGAGTAGAATTAATGAGAAA
CTGAAAGCTCTACAGAACCTAATTCCCATTCTAACAAGACTGACAAAGCT
TTCATGCTGGATGAGGCT
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