FC921695

Overview
NameFC921695
Unique NameFC921695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921695 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 84/210 (40.00%), Postives = 113/210 (53.81%), Query Frame = 3 
Query:    6 LQFGSLNFGTESSLVVTTDEPIGKSVVDGPVVFQPSTMLKKDDKVKSVGASNDHDL-----GAVGCPK---ENGHIKN-STNGPALSNGVNHLRADGIDFSLFHQNAGGHANP---SPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYP 599
            +QFGSLN   E+S V T  E + K   DG V    S       +  S   +ND D       ++  P+   +NG IK  S +  +L+NGV  ++ D I       +  G ++P   +  SKF  L     D  D ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQLLQ+++ +DIPKA  P
Sbjct:   40 IQFGSLNLAAENSSVNTNGE-LKKGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNGIIKEISESNKSLNNGVA-VKTDPIGLDNLSMS-DGESDPVYKASSSKFQAL-----DNEDFSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSP 239
The following BLAST results are available for this feature:
BLAST of FC921695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP24_ARATH1.761e-2340.00Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC32108C07EF RVDevelopN Citrus clementina cDNA clone C32108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921695 ID=FC921695; Name=FC921695; organism=Citrus clementina; type=EST; length=668bp
AAGAGTTGCAGTTCGGTTCTTTGAATTTTGGAACTGAAAGTTCTTTGGTT
GTTACAACTGATGAACCAATTGGAAAGTCGGTTGTTGATGGGCCAGTTGT
TTTTCAGCCCTCAACCATGCTTAAGAAGGATGATAAAGTGAAGAGTGTAG
GAGCATCGAATGATCATGACTTGGGAGCCGTAGGATGTCCAAAAGAAAAC
GGACACATTAAGAATTCTACTAATGGCCCTGCCCTCAGTAATGGTGTGAA
TCATTTGAGAGCAGATGGTATTGATTTTAGTTTGTTTCACCAGAATGCAG
GAGGTCATGCAAATCCTTCCCCAATTTCAAAATTTCATGTCCTTTGTGAT
GGAAATATTGATGGCAGGGATCAGAATGCGGCTGCCTGCAACTCATCAAT
ATCTGGTTCTAAAGAGGTGCCCATGAAGGCAATCAATGAGCCTGTTAAGT
CTGTTAAAGACTTACTACCACGAGGCTTAATCAACTCGGGGAATTTATGT
TTTCTTAATGCAACTCTTCAGGCTCTGATGTCCTGTTCCCCTTTTGTCCA
GCTGTTGCAGGAACTTAGAACTCGTGACATCCCCAAGGCTGGATACCCAC
ATTACTGCATTCGTTGGGTTTGCTCTGACTTTGACGCACCTCTGGTGGAG
CTCACAAAAAAAAAAAAA
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