FC921698

Overview
NameFC921698
Unique NameFC921698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.818e-80
Identity = 147/204 (72.06%), Postives = 165/204 (80.88%), Query Frame = 3
Query:  117 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTLLLR----WKEXGYLR 716
            M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQA+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AIA AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  GSDAS L T   +    WK  G  R
Sbjct:    1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKR 204          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 50/142 (35.21%), Postives = 82/142 (57.75%), Query Frame = 3
Query:  255 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 680
            D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA    I C+ LTEP +GS+   + T
Sbjct:   24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMET 165          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 53/137 (38.69%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  270 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 680
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + C+ LTEP  GSD S++ T
Sbjct:   57 EEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMET 193          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  279 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTLLLRWKEXGYL 713
            +T E+  +R  VR+   KEIAP   E  EK  EFPF +I K+G   + G  + + YG  G  V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+P+LA  + +  +ALTEP  GSDA +L T  ++ K   YL
Sbjct:    3 VTQEQVMMRKMVRDFARKEIAPA-AEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIK-KNGKYL 147          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  270 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 680
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V S L M  I   GSEEQ+QKYLP LA+   + C+ LTEP  GSD S++ T
Sbjct:   57 EEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISQMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMET 193          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  270 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 680
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L + G TI+GY C G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+   + C+ LTEP +GSD S + T
Sbjct:   57 EEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMET 193          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  270 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 680
            ++ LT++E+ +R   R   ++ +   ++       F   ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T
Sbjct:   57 EEQLTADEKLIRDTFRNYWQERLMSQILLANRNEVFHRDIVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMET 193          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 54/141 (38.30%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  270 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE-QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTLLL 689
            ++ LT++E  +R   R   ++ + P +V       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEE Q+QKYLP LA+   + C+ LTEP +GSD  ++ T  L
Sbjct:   26 EEQLTADEILIRDTFRTYCQEHLMPRIVLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRAL 166          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  279 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTL 683
            LT E++ VR  VRE  E E+ PI  E  E   FP   + K+G   + G    K YG  G  V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL  LA+   I  + LTEP  G+D+ A  T+
Sbjct:    5 LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTV 140          
BLAST of FC921698 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 50/169 (29.59%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  207 AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTLLLRWKEXGYL 713
            +F    P  KF    +D    + LLT EE  +R +V +  + E+ P +   +   +F   ++ + G + + G TI  YG   H   G      E  +VD+   + + V SSL M  I   G++ QK KYL  LA  + + C+ LTEP  GSD + + T  ++     Y+
Sbjct:   27 SFGTIVPGDKFE--WNDPLSLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDREIMREYGKMGMLGATIPAYGGVSHVAYGLMANAVE--KVDSGYRSAMSVQSSLVMHPINTFGTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYV 191          
The following BLAST results are available for this feature:
BLAST of FC921698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ACOX4_ARATH1.818e-8072.06Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
GCDH_CAEEL3.261e-2135.21Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
GCDH_HUMAN8.881e-1938.69Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
ACDB_BACSU3.375e-1840.14Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
GCDH_MACFA4.408e-1837.96Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
GCDH_BOVIN4.408e-1837.23Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos t... [more]
GCDH_MOUSE5.757e-1836.50Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
GCDH_PIG1.282e-1738.30Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]
ACDS_CLOAB3.159e-1638.24Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
GCDH_DICDI1.467e-1329.59Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC32108C10EF RVDevelopN Citrus clementina cDNA clone C32108C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921698 ID=FC921698; Name=FC921698; organism=Citrus clementina; type=EST; length=727bp
GATCTCATCTCCTTCAGTTTCTTATTTTCACGTTTTTTTTTCAACGCTTA
AGACTTCGCTTTAACGCGCTCTGAGTTTCCTCCGTCACATCACACACACT
GTTATCCGTAATCACCATGACTATTCACTCATCCAAACATCAAGATGATG
TTGACAAAAATGCCAGGAGTTCGTATTTTAATTTACCAGCATTGGATATT
TCAGTCGCATTCCCTCAAGCAACACCGGCGTCTAAGTTTCCTCCTTGTGC
GTCAGACTACTATCAATTTGATGATCTCTTGACTTCGGAGGAGCAGGCTG
TTCGGATGAAAGTGAGAGAGTGTATGGAGAAAGAAATAGCCCCTATAATG
GTGGAGTATTGGGAGAAAGCAGAATTTCCCTTTCATGTTATTCCAAAGCT
TGGTGCCCTACGCGTAGCTGGTGGCACAATAAAGGGCTATGGCTGTCCTG
GTCACTCTGTTACTGGAGCTGCTATTGCTATAGCAGAAATTGCTCGAGTT
GATGCTAGTTGTTCTACTTTTATATTGGTGCATTCCTCTCTGGCGATGCT
GACTATTGCATTGTGCGGGTCAGAGGAACAGAAGCAGAAATATCTACCTT
CTTTGGCTCAGTTGAACACCATTGCCTGTTGGGCTTTGACTGAACCTGCC
TATGGGAGTGATGCAAGTGCTTTGAACACACTGCTACTAAGGTGGAAGGA
GGNTGGATACTTGAGGTCAAAGCGCTG
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