FC921703

Overview
NameFC921703
Unique NameFC921703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.916e-63
Identity = 125/227 (55.07%), Postives = 155/227 (68.28%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRXXXXXXXXXXXXXXXXXXXXXXAMIPPQPGFGYQQQLVXXXXXXXXXXXNFFVPIXXXXXXXXXXXXXXXXXMQQKQQHVPMMQPQMLPRGRV 683
            +AQK SERE EL+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TS KVMRDP+G S+GSGFVAF+TPEEA+ A+ +++GKM+  KPLYVA+AQRKEDRR RLQAQF+Q+RPVAM  +V PR                      AMIPPQPG+GYQQQLV           +FF+P+                 +Q  QQ  PMMQ QM PRGR+
Sbjct:  289 RAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM-VQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRM 514

HSP 2 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3 
Query:   54 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            Q     A+K +  N+Y+KNL +S  D+ LK  F  +G ITS  VM+D  G S+G GFV F   ++A+RA+  +NG     K  YV  AQ+K +R   L+ ++ Q
Sbjct:  203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306

HSP 3 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDR 335
            N++IKNLD+SID + L   FS FG+I SCKV  D SG S+G GFV ++  E A +A+ ++NG ++  K +YV    R+++R
Sbjct:  125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.153e-42
Identity = 102/220 (46.36%), Postives = 127/220 (57.73%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR-PVAMASTVAPRXXXXXXXXXXXXXXXXXXXXXXAMIPPQP-GFGYQQQLVXXXXXXXXXXXNFFVPIXXXXXXXXXXXXXXXXXMQQKQQHVPMMQ 656
            +AQK SERE EL+ +FEQ      +K QGANLY+KNLDDS+DDEKLK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+  KPLY+ALAQRKEDRRA LQA F+Q+R P  M+    P                       +M+P QP G+G+Q Q +           NF VP                      QQH+   Q
Sbjct:  303 RAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHP----PGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFM-PGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQ 517

HSP 2 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            N+Y+KNL   I +++L++ F  FG I+S  VMRD SG SR  GFV F   E A+ A+ +MNG  +    LYV  AQ+K +R   L+ +F Q R
Sbjct:  230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322

HSP 3 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDR 335
            N++IKNLD SID++ L + FS FG+I SCKV  D +G S+G GFV F   E A  A+ ++NG ++  K ++V    R+++R
Sbjct:  137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 87/178 (48.88%), Postives = 116/178 (65.17%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR-PVAMASTVAP----RXXXXXXXXXXXXXXXXXXXXXXAMIPPQP-GFGYQQQLV 518
            +AQK S+RE EL+ +FEQ      +K QG+NLY+KNLDDS++DEKLK++FS +G++TSCKVM +  G+SRG GFVA+S PEEA  A+ EMNGKM+  KPLYVALAQRKE+R+A LQ+ F Q+R P  M+   +P                            ++P QP G+GYQ Q +
Sbjct:  299 RAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFM 476

HSP 2 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            N+Y+KNL   I D++LK+ F  +G I+S  VM+D SG SR  GFV F +PE A+ A+ +MNG  +    LYV  AQ+K DR   L+ +F Q R
Sbjct:  226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318

HSP 3 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDR 335
            N++IKNLD SID++ L + FS FG+I SCKV  D  G S+G GFV F   E A  A+ ++NG ++  K ++V    R++DR
Sbjct:  133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 398
            +AQK SERE EL+  +E    E   KFQG NLY+KN+ +S DDE+L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+  +PLYVALAQRK+ RR +L+AQ  Q   + +    A
Sbjct:  301 RAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAA 432

HSP 2 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:   51 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQF 359
            E+  K    +    N+Y KN+D  + D++ ++LF+ FG ITSC + RD  G S+G GFV F    EA +A+ E++      + L+VA AQ+K +R   L+  +
Sbjct:  214 ERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            +AQK  ER+ ELK +FEQ  +E   ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q
Sbjct:  265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384

HSP 2 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 49/111 (44.14%), Postives = 75/111 (67.57%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K + E+  +  A   +  N+YIKN  + +DDE LK+LFS FG   S KVMRDP+G S+G GFV++   E+A++A+ EMNGK +  K ++V  AQ+K +R+A L+ +F Q++
Sbjct:  174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284

HSP 3 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G  FV F T E A +A+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAP 401
            +AQK  ER+ ELK +FEQ  ++   ++QG NLY+KNLDD IDDE+L++ F+PFGSITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q     MAS   P
Sbjct:  265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ----RMASVRVP 392

HSP 2 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K + E+  +  A   +  N+YIKN  + +DDE+LK+ F  +G+  S KVM D  G SRG GFV+F   E+A +A+ +MNGK +  K ++V  AQ+K +R+  L+ +F QM+
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/121 (59.50%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            +AQK  ER+ ELK +FEQ  ++   ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q
Sbjct:  265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K + E+  +  A   +  N+YIKN  + +DDE+LK+LF  FG   S KVM D SG S+G GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K +R+  L+ +F QM+
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/121 (59.50%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            +AQK  ER+ ELK +FEQ  ++   ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q
Sbjct:  265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K + E+  +  A   +  N+YIKN  + +DDE+LK LF  FG   S KVM D SG S+G GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K +R+  L+ +F QM+
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/121 (59.50%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            +AQK  ER+ ELK +FEQ  ++   ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q
Sbjct:  265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K Q E+  +  A   +  N+YIKN  + +DDE+LK+LF  FG   S KVM D SG S+G GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K +R+  L+ +F QM+
Sbjct:  174 KSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGAR 186
[Close]
BLAST of FC921703 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/121 (59.50%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:    3 KAQKISERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQ 365
            +AQK  ER+ ELK +FEQ  ++   ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V  KPLYVALAQRKE+R+A L  Q+ Q
Sbjct:  265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:   39 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQFAQMR 371
            K + E+  +  A   +  N+YIKN  + +DDE+LK LF  FG   S KVM D SG S+G GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K +R+  L+ +F QM+
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:   93 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVPKPLYVALAQRKEDRRARLQAQ 356
            N++IKNLD SID++ L   FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++  + ++V   + +++R A L A+
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
The following BLAST results are available for this feature:
BLAST of FC921703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP2_ARATH6.916e-6355.07Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP3_ARATH5.153e-4246.36Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP5_ARATH6.965e-3948.88Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_USTMA1.897e-3656.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN2.739e-3562.81Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABPB_XENLA1.775e-3457.14Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP1_RAT2.318e-3459.50Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_PONAB2.318e-3459.50Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_MOUSE2.318e-3459.50Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN2.318e-3459.50Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC32108D04EF RVDevelopN Citrus clementina cDNA clone C32108D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921703 ID=FC921703; Name=FC921703; organism=Citrus clementina; type=EST; length=683bp
GGAAAGCCCAAAAGATCTCTGAAAGAGAACTTGAATTGAAACATCAATTT
GAGCAGAATATGAAGGAAGCAGCTGACAAATTTCAGGGAGCAAACTTATA
TATTAAAAATTTAGATGATAGCATAGATGATGAAAAACTTAAGCAGCTGT
TCTCTCCATTTGGTAGCATCACATCATGCAAGGTAATGCGAGACCCAAGT
GGAATTAGTAGAGGATCCGGGTTTGTTGCGTTCTCAACTCCTGAAGAGGC
ATCTAGAGCTCTTCTGGAGATGAATGGCAAGATGGTTGTCCCCAAACCGC
TTTATGTTGCTCTTGCCCAACGCAAGGAAGATAGAAGAGCTAGGTTGCAG
GCTCAATTTGCACAAATGAGGCCAGTTGCAATGGCTTCTACAGTCGCTCC
TCGAATGCCGATGTACCCTCCTGGTGGTCCAGGTATTGGGCAACAAATAT
TCTATGGTCAAGGCCCGCCTGCTATGATTCCTCCTCAGCCTGGATTTGGT
TATCAGCAGCAGCTTGTTCCTGGTATGAGGCCAGGTGGGGGTCCCATGNC
AAATTTCTTTGTGCCGATAGCTCAGCCAGGGCAGCAGGGTCAGCGTCCTA
GTGGCAGACGGGCAGCAGGCATGCAGCAGAAACAGCAGCATGTTCCAATG
ATGCAGCCACAGATGCTTCCTAGGGGGCGTGTC
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