FC921706

Overview
NameFC921706
Unique NameFC921706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G HV GEFSMA+VQAN+++EDQCQ+ESGPLS  +SGP+GTFVGVYDGHGGPETA +I+D+LF +LKRFASE + +S +V++KA+ ATED F S+V K+WP KP +A+VGSCCLVG+IC G+LY
Sbjct:   32 DGLLW--------YKDTGQHVNGEFSMAVVQANNLLEDQCQIESGPLSFLDSGPYGTFVGVYDGHGGPETACYINDHLFHHLKRFASEQNSISADVLKKAYEATEDGFFSVVTKQWPVKPQIAAVGSCCLVGVICGGILY 163          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 86/140 (61.43%), Postives = 116/140 (82.86%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G H+ GEFSMA+VQAN+++EDQ Q+ESGPLS+ +SGP+GTF+G+YDGHGGPET+RF++D+LFQ+LKRFA+E   MS +VI+KA+ ATE+ FL +V K+WP+KP +A+VGSCCLVG+IC G+LY
Sbjct:   30 DGLLW--------YKDFGQHLVGEFSMAVVQANNLLEDQSQVESGPLSTLDSGPYGTFIGIYDGHGGPETSRFVNDHLFQHLKRFAAEQASMSVDVIKKAYEATEEGFLGVVTKQWPTKPQIAAVGSCCLVGVICGGMLY 161          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 89/140 (63.57%), Postives = 108/140 (77.14%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG  W        +KDLG H +GEFSMA++QANS+MEDQCQ+ESGPL+ +N    GTFVGVYDGHGGPE +RFI+DN+F  LK+FASE  E+SE VI KAFA T+ DFL  V K+WP+ P MASVGSCCL G+IC+GL+Y
Sbjct:   23 DGLTW--------YKDLGLHTFGEFSMAMIQANSVMEDQCQIESGPLTFNNPTVQGTFVGVYDGHGGPEASRFIADNIFPKLKKFASEGREISEQVISKAFAETDKDFLKTVTKQWPTNPQMASVGSCCLAGVICNGLVY 154          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.488e-47
Identity = 86/140 (61.43%), Postives = 111/140 (79.29%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G HV GEFSM+++QAN+++ED  +LESGP+S  +SGP  TFVGVYDGHGGPE ARF++ +LF N+++F SE+H MS NVI KAF ATE+DFLSLV+++W  KP +ASVG+CCLVG+ICSGLLY
Sbjct:   34 DGLLW--------YKDSGNHVAGEFSMSVIQANNLLEDHSKLESGPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIRKFTSENHGMSANVITKAFLATEEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLY 165          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 89/140 (63.57%), Postives = 110/140 (78.57%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G  V GEFSMA+VQAN+++EDQ Q+ESG LS +  GP GTF+GVYDGHGGPETARFI+D++F +L+RFA+EH  MS +VIRKAF ATE+ FLSLV K+W  KP +A+VGSCCLVG+ICSG LY
Sbjct:   33 DGLLW--------YKDAGQLVTGEFSMAVVQANNLLEDQSQVESGALSMAEPGPQGTFIGVYDGHGGPETARFINDHMFHHLRRFATEHKCMSTDVIRKAFQATEEGFLSLVSKQWSLKPQIAAVGSCCLVGVICSGTLY 164          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.649e-45
Identity = 82/140 (58.57%), Postives = 107/140 (76.43%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G H+ GEFSMA+VQAN+++ED  QLESGP+S   SGP  TFVGVYDGHGGPE ARF++D LF N+KR+ SE   MS +VI + F ATE++FL LV+++W +KP +ASVG+CCLVG++C+GLLY
Sbjct:   35 DGLLW--------YKDSGNHITGEFSMAVVQANNLLEDHSQLESGPISLHESGPEATFVGVYDGHGGPEAARFVNDRLFYNIKRYTSEQRGMSPDVITRGFVATEEEFLGLVQEQWKTKPQIASVGACCLVGIVCNGLLY 166          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.072e-45
Identity = 83/141 (58.87%), Postives = 114/141 (80.85%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSS-SNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD   H++G+FSMA+VQAN+++EDQ Q+ESGPL++ S+SGP+GTFVGVYDGHGGPET+RF++D+LF +LKRFA+E   MS +VIRKA+ ATE+ FL +V K+W  KP++A+VGSCCL+G++C G LY
Sbjct:   32 DGLLW--------YKDSAHHLFGDFSMAVVQANNLLEDQSQVESGPLTTLSSSGPYGTFVGVYDGHGGPETSRFVNDHLFHHLKRFAAEQDSMSVDVIRKAYEATEEGFLGVVAKQWAVKPHIAAVGSCCLIGVVCDGKLY 164          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.141e-44
Identity = 82/127 (64.57%), Postives = 105/127 (82.68%), Query Frame = 2
Query:  275 FKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            F+D G HV+G+FSMA+VQANS++EDQ QLESG LSS +SGP GTFVGVYDGHGGPET+RFI+D++F +LKRF +E   MS  VI+KAF ATE+ FLS+V  ++ ++P +A+VGSCCLV +IC G LY
Sbjct:   37 FRDSGQHVFGDFSMAVVQANSLLEDQSQLESGSLSSHDSGPFGTFVGVYDGHGGPETSRFINDHMFHHLKRFTAEQQCMSSEVIKKAFQATEEGFLSIVTNQFQTRPQIATVGSCCLVSVICDGKLY 163          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W        +KD G  V GEFSMA+VQAN+++ED  Q+ESGPLS+++    GT VGVYDGHGGPETAR+I+D+LF +L+ FASEH  MS +VIRKAF ATE+ F S+V  +W  +P +A+VGSCCLVG+IC+G LY
Sbjct:   34 DGLLW--------YKDAGQLVAGEFSMAVVQANNLLEDHSQVESGPLSTTDPNLQGTLVGVYDGHGGPETARYINDHLFNHLRGFASEHKCMSADVIRKAFRATEEGFFSVVSSQWSMRPQLAAVGSCCLVGVICAGNLY 165          
BLAST of FC921706 vs. ExPASy Swiss-Prot
Match: P2C78_ORYSJ (Probable protein phosphatase 2C 78 OS=Oryza sativa subsp. japonica GN=Os12g0580900 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  236 DGTVWRTKHI*PRFKDLGPHVYGEFSMALVQANSIMEDQCQLESGPLSSSNSGPHGTFVGVYDGHGGPETARFISDNLFQNLKRFASEHHEMSENVIRKAFAATEDDFLSLVKKEWPSKPNMASVGSCCLVGLICSGLLY 655
            DG +W          +L PH  GE+S+A+ QAN+ +EDQ Q+ + P +        TFVGVYDGHGGPE +RFIS  LF +L RFASE   MS + I++AF ATE++FL +VK+ W  +P +ASVGSCCLVG I   +LY
Sbjct:   27 DGLLWHA--------ELKPHASGEYSIAVAQANAELEDQGQVVTSPAA--------TFVGVYDGHGGPEASRFISSRLFPHLHRFASEQGGMSTDAIKRAFHATEEEFLHMVKRSWLKQPQIASVGSCCLVGAITDNVLY 150          
The following BLAST results are available for this feature:
BLAST of FC921706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2C60_ORYSJ9.053e-4963.57Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C46_ARATH1.182e-4861.43Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C67_ARATH2.017e-4863.57Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]
P2C38_ARATH6.488e-4761.43Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C28_ORYSJ2.465e-4663.57Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C48_ARATH4.649e-4558.57Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C79_ARATH6.072e-4558.87Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C64_ARATH5.141e-4464.57Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C72_ORYSJ6.284e-4258.57Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C78_ORYSJ5.895e-3250.00Probable protein phosphatase 2C 78 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108D07EF RVDevelopN Citrus clementina cDNA clone C32108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921706 ID=FC921706; Name=FC921706; organism=Citrus clementina; type=EST; length=656bp
AAAAATTCAAAAACAACAACAATGTCAGAGTTTGCAAAATTAAGTCTCTT
TATTATTTCCCATCCTGGATCTCATCTGACAACAAACTGAAGATCGTCTG
TCAAAAGGCTCCAAAATTATTTTTTTTCTTATCCATTGCCCTTGCTCCCC
TTTTGATCATCTCTCTGATCTCAGACCAAACTCTGTCTTGTATCAGATCT
TTATGTTCTTTTACAGCTAAGTCTGTTCCTTGTGAGATGGCACAGTGTGG
AGGACCAAACACATTTAACCAAGATTCAAGGATTTGGGGCCTCATGTTTA
CGGTGAATTCTCGATGGCCTTAGTGCAAGCCAACAGCATTATGGAGGATC
AATGTCAACTCGAATCAGGGCCATTGAGTTCCTCAAATTCCGGTCCTCAC
GGAACCTTCGTTGGTGTTTATGATGGACATGGAGGTCCTGAGACTGCAAG
ATTCATCAGTGACAATCTTTTCCAAAATCTTAAGAGATTTGCATCGGAGC
ATCATGAGATGTCGGAAAATGTTATAAGAAAGGCTTTCGCAGCAACAGAG
GATGATTTTCTCTCCCTTGTGAAGAAAGAGTGGCCTAGTAAGCCAAATAT
GGCGTCTGTGGGATCGTGTTGTCTGGTGGGGTTAATATGCAGTGGATTGC
TGTATA
back to top