FC921709

Overview
NameFC921709
Unique NameFC921709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA3_ORYSJ (Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  143 LKDFDVEPKHPSRESLRRWRSAC-TIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIES 355
            LK F+V  K+PS E+ RRWR A  T+VKNR+RRFR+V DLD+RS+AE ++R++QE++RVAL + +  LQ I++
Sbjct:   12 LKSFEVPAKNPSEEAQRRWRDAVGTLVKNRRRRFRMVPDLDKRSQAETQRRKIQEKLRVALFVQKAALQFIDA 84          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA4_ARATH (Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  143 LKDFDVEPKHPSRESLRRWRSACTIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIE--SHEDVPIGDTV--AGRLQEFVDDIISTVKCGDVK 448
            L+DF+VE K+PS E+ +RWRS+ +IVKNR RRFR + DLD+ ++ E KK Q+QE++RVA  + +  L  I+  +  +  + D V  AG   E  D++ S V+  D K
Sbjct:    5 LRDFEVEAKNPSLEARQRWRSSVSIVKNRTRRFRNIRDLDKLADYENKKHQIQEKIRVAFFVQKAALHFIDAAARPEYKLTDEVKKAGFSIE-ADELASMVRKNDTK 110          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA11_ARATH (Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  143 LKDFDVEPKHPSRESLRRWRSACTIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIE--SHEDVPIGDTV--AGRLQEFVDDIISTVKCGDVKEKIRL 463
            LKDF+V  K+PS E+ +RWRS+  +VKNR RRFR++++LD+ +E EKK+ Q+QE++RV   + +   Q I+  +  +  + D V  AG   E  D++ S V+  D K   ++
Sbjct:    5 LKDFEVASKNPSLEARQRWRSSVGLVKNRARRFRMISNLDKLAENEKKRCQIQEKIRVVFYVQKAAFQFIDAGARPEYKLTDEVKKAGFYVE-ADELASMVRNHDTKSLTKI 115          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA5_ORYSJ (Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  152 FDVEPKHPSRESLRRWRSAC-TIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCIR--------DTLQLIESHED 364
            FDV  K+PS E+ RRWR A  TIVKNR+RRFR V DLDRRS  + K R  QE++RVAL ++        D L LI S  D
Sbjct:   12 FDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLDRRSLDKAKVRSTQEKIRVALYVQQAALIFSDDELALITSKHD 91          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA1_ARATH (Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  155 DVEPKHPSRESLRRWRSACTIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIES 355
            DV+PK+ S E+L+RWR  C IVKN KRRFR  A+L +RSEAE  +R  QE+ RVA+ + +  LQ I S
Sbjct:   11 DVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSNQEKFRVAVLVSQAALQFINS 78          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA2_ARATH (Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  146 KDFDVEPKHPSRESLRRWRSACTIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIE--SHEDVPIGDTV-AGRLQEFVDDIISTVKCGDVKE 451
            ++FDV+ KH S E L +WR+ C +VKN KRRFR  A+L +R EA   +R  QE++R+A+ + +   Q I   S  D  + + V A   +   D++ S V+  DVK+
Sbjct:    7 ENFDVKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRIAVLVSKAAFQFISGVSPSDYTVPEDVKAAGFEICADELGSIVESHDVKK 112          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA4_ORYSJ (Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  146 KDFDVEPKHPSRESLRRWRSAC-TIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCIR 331
            ++FDV  K+PS E+ RRWR A  TIVKNR+RRFR V DL+RRS  + K R  QE++RVAL ++
Sbjct:   10 ENFDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLERRSLDKAKVRSTQEKIRVALYVQ 72          
BLAST of FC921709 vs. ExPASy Swiss-Prot
Match: ACA7_ARATH (Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  149 DFDVEPKHPSRESLRRWRSACTIVKNRKRRFRVVADLDRRSEAEKKKRQMQEQVRVALCI-RDTLQLIE--SHEDVPIGDTV-AGRLQEFVDDIISTVKCGDVKE 451
            +FDV+ KH S E L +WR+ C++VKN KRRFR  A+L +R EA   +R  QE++R+A+ + +   Q I   S  D  + + V A       D++ S V+  DVK+
Sbjct:    8 NFDVKAKHSSEEVLEKWRNLCSVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRIAVLVSKAAFQFISGVSPSDYKVPEEVKAAGFDICADELGSIVEGHDVKK 112          
The following BLAST results are available for this feature:
BLAST of FC921709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ACA3_ORYSJ3.633e-1454.79Calcium-transporting ATPase 3, plasma membrane-typ... [more]
ACA4_ARATH2.355e-1342.99Calcium-transporting ATPase 4, plasma membrane-typ... [more]
ACA11_ARATH1.526e-1239.29Putative calcium-transporting ATPase 11, plasma me... [more]
ACA5_ORYSJ4.441e-1253.75Probable calcium-transporting ATPase 5, plasma mem... [more]
ACA1_ARATH1.292e-1154.41Calcium-transporting ATPase 1, chloroplastic OS=Ar... [more]
ACA2_ARATH2.204e-1138.68Calcium-transporting ATPase 2, plasma membrane-typ... [more]
ACA4_ORYSJ2.879e-1157.14Probable calcium-transporting ATPase 4, plasma mem... [more]
ACA7_ARATH3.760e-1139.05Putative calcium-transporting ATPase 7, plasma mem... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32108D10EF RVDevelopN Citrus clementina cDNA clone C32108D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921709 ID=FC921709; Name=FC921709; organism=Citrus clementina; type=EST; length=697bp
GGAGAAAAGTCAAAACAGACCTACAGTAGCTAATTCTCTTTGAAAAGCAA
GCTATTCCTCTGAACTAACAACTGAGCGAACAGCTGAATTGNGGAGGAAA
AAAAAAAAAACGAAAAACAAAAAAATGGACAAGTTTTTCAATTTGAAAGA
TTTCGATGTGGAGCCCAAACATCCGTCGAGGGAATCCTTGAGACGATGGC
GGTCTGCCTGCACTATCGTCAAGAACCGAAAACGAAGGTTCCGTGTGGTC
GCCGATCTCGACAGGCGTTCCGAGGCCGAGAAGAAAAAACGCCAAATGCA
GGAACAAGTAAGGGTTGCACTTTGTATTCGAGATACACTTCAGTTAATTG
AATCACATGAAGATGTGCCAATCGGGGATACTGTCGCTGGAAGACTTCAA
GAATTTGTTGATGATATAATATCCACTGTCAAATGCGGTGATGTAAAGGA
AAAAATAAGGTTGGCACTTTGTATTCAAGAAACTGCACTTCAGTTAATTG
AAGTTCGGAGTTTGCTTTCACTTGAAGATGTGTCCTCAAGTGAATACACT
ATGACTGAGGCTGCTGAAGCTGGAAGATTTCAAGATTTTTTTGCTGGTGT
ACGATCCATTTCGGATGATGATGCTGCAATTAGTTTGATTATGCAATCGG
TTCATAGCTTTTCCCTGAAGGGGAAATACAGAAGAAGAATCATTTCC
back to top