FC921710

Overview
NameFC921710
Unique NameFC921710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921710 vs. ExPASy Swiss-Prot
Match: TRPH_HAEIN (Protein trpH OS=Haemophilus influenzae GN=trpH PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:  257 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGIKIIPGVEISTIFSQRG 466
            ++LH HS  SDG LSP++LV RA+  GV VLAL DHDT++GI EA   A+  GI++I GVEIST +  RG
Sbjct:    5 YDLHCHSTASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEISTNWEGRG 74
[Close]
BLAST of FC921710 vs. ExPASy Swiss-Prot
Match: TRPH_SALTY (Protein trpH OS=Salmonella typhimurium GN=trpH PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 2 
Query:  251 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG--IKIIPGVEISTIFSQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 691
            V+++LHSH+  SDG L+P  LV RA    V  LA+TDHDT + IP A E   R G  + +IPGVEIST++     E+ E +HI+          +  + +FLA   + R  R + +            WE   ++A  G A  R H AR
Sbjct:   12 VIYDLHSHTTASDGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNIDIA---HPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGG-AVTRGHFAR 150
The following BLAST results are available for this feature:
BLAST of FC921710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRPH_HAEIN9.481e-1557.14Protein trpH OS=Haemophilus influenzae GN=trpH PE=... [more]
TRPH_SALTY8.874e-1336.24Protein trpH OS=Salmonella typhimurium GN=trpH PE=... [more]
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Properties
Property NameValue
Genbank descriptionC32108D11EF RVDevelopN Citrus clementina cDNA clone C32108D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921710 ID=FC921710; Name=FC921710; organism=Citrus clementina; type=EST; length=694bp
CTCAAAAAAATAAAAAAATCAAGGAAAAAGAAACATGGTTGGTGATGGTC
ATGTCGAGAAGAGATCAAAAGACAAAAAGAAGAAGAAGAAGCAGAAGCGC
GGTGGTGGCAAGAAGAAGATGACAGCCGAGCAGAGTCTTGCTTTCAACTC
TGTAACCGAATGGGTTTATTTGGATCAAAGTCATTCTTCTTCGTCCTCTG
AGGATGATTTCGGAGTGCACCAGATTCTTAATAGAGCTGTGGACAACAAC
GTGGTGTTTGAATTGCATTCACATTCCAATTTTAGTGATGGCTACTTGTC
ACCTTCTAAGCTTGTTGAGAGAGCTCATTGTAACGGGGTGAAAGTTCTTG
CTCTGACTGATCATGACACCATGTCTGGCATACCTGAGGCCATTGAAACA
GCTCGCAGATTTGGCATAAAGATAATTCCCGGTGTCGAAATCAGCACAAT
TTTCTCTCAAAGGGGCTCTGAATCAGAGGAACCAGTTCACATCCTTGCGT
ACTATAGTAGCTGTGGGCCATCAAAGTATGAAGAACTGGAAAATTTCTTG
GCTAACATAAGGGATGGCCGTTTCCTACGTGCTAAAGACATGATCTTGAA
ACTAAATAAACTGAAGTTGCCTCTTAAGTGGGAGCACGTGGCAAAGATTG
CTGGCAAGGGAGTTGCTCCTGGAAGACTGCATGTGGCTCGTGCT
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