FC921711

Overview
NameFC921711
Unique NameFC921711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.285e-58
Identity = 101/136 (74.26%), Postives = 114/136 (83.82%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N+WG + YP+VPGHEIVG  TKVG NV+KFKEGD+VGVGV+  SCQ CES  Q LENYCP M  TYN+I  DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPM YYGMTE G+HLGVAGLGG
Sbjct:   59 NDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGG 194          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.119e-57
Identity = 101/136 (74.26%), Postives = 117/136 (86.03%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N+WG T YP+VPGHEI G VTKVG+NV+KFKEGD+VGVGV+V SCQ+CE  QQ LE+YCP  + TYNS  + GT+T GGYSD +VV Q +VL+FPDN+PLDAGAPLLCAGITVYSPM YYGMTEPG+HLGVAGLGG
Sbjct:   52 NDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPYK-GTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG 186          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.640e-56
Identity = 100/136 (73.53%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N+WG T YP+VPGHEIVG VTKVG NV KF+ GD VGVGV+V SCQ CE+  Q LE YCP  + TYNS  + GT+TYGGYSD +VV Q YV++FPDN+PLDAGAPLLCAGITVYSPM YYGMTEPG+HLGVAGLGG
Sbjct:   59 NDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPYK-GTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG 193          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.038e-52
Identity = 94/137 (68.61%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMT-EPGQHLGVAGLGG 408
            N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CES  Q LENYCP ++ TYNS   DGT+  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPM YYGMT E G+ LGV GLGG
Sbjct:   53 NHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGG 189          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.153e-52
Identity = 89/136 (65.44%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEW    YP+VPGHEI G VT+ G NV+KFK GDKVGVG +V SC  C+S  QGLEN+CP +I TYNS+D+DGT TYGGYS ++VV + +V+RFP+ MPLD GAPLLCAGITVYSPM Y+G+  P +H+GV GLGG
Sbjct:   52 NEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGG 187          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.557e-51
Identity = 94/138 (68.12%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMT-EPGQHLGVAGLGG 408
            N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CES  Q LENYCP ++ TYNS   DGT +  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPM YYGMT E G+ LGV GLGG
Sbjct:   53 NHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGG 190          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.718e-51
Identity = 85/136 (62.50%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG + YP+VPGHEIVG VT+VG+ V KFK GD+VGVG +V SC+ CE+    LENYCP  ILTY +   DG+ TYGGYSD++V D+H+++R PDN+PLD  APLLCAGIT YSP+ Y+G+ +PG H+GV GLGG
Sbjct:   57 NEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGG 192          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.165e-50
Identity = 85/136 (62.50%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEW  + YP+VPGHEI G VT+VG NV++FK GD+VGVG +V SC+ CES   G EN+CP  + TYNS+D+DGT TYGGYS ++VV + +V+ FP+ MPLD GAPLLCAGITVY+PM Y+G+  PG+H+GV GLGG
Sbjct:   62 NEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGG 197          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.828e-50
Identity = 88/136 (64.71%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG   YP +PGHEIVG VT+VGN V  FK GDKVGVG +V SC+ CES +  LENYCP MILTY S   DGT TYGGYSD++VV++H+ +R PDNM LDA APLLCAG+TVYSP+ ++ + +PG H+GV GLGG
Sbjct:   60 NEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGG 195          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.394e-49
Identity = 87/136 (63.97%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG++ YP+VPGHEIVG VT+VG  V+KFK G+KVGVG LV+SC  C+S  +G+ENYCP  I TY     D T TYGGYSD +V ++ +V+R PDN+PLDA APLLCAGITVYSPM Y+G+ +PG H+GV GLGG
Sbjct:   55 NEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGG 190          
The following BLAST results are available for this feature:
BLAST of FC921711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
CADH9_ARATH6.285e-5874.26Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH1_STYHU3.119e-5774.26Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MEDSA2.640e-5673.53Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH3_ARATH1.038e-5268.61Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH5_ORYSJ5.153e-5265.44Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH2_ARATH2.557e-5168.12Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_FRAAN9.718e-5162.50Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH3_ORYSJ2.165e-5062.50Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH_MESCR2.828e-5064.71Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH8_ARATH2.394e-4963.97Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC32108D12EF RVDevelopN Citrus clementina cDNA clone C32108D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921711 ID=FC921711; Name=FC921711; organism=Citrus clementina; type=EST; length=410bp
AATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGT
TGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAAAGAGGGTG
ACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAATGTGAAAGC
AGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTTACATATAA
CTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTCAGATCTGA
TTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACATGCCTCTT
GATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTACAGCCCAAT
GATATATTATGGAATGACTGAGCCAGGCCAGCATTTGGGTGTAGCAGGAC
TTGGTGGGCT
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