FC921716

Overview
NameFC921716
Unique NameFC921716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921716 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 44/140 (31.43%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  236 MDSRQIIGCGVTSAGISYSSSCPTVPSIPNRLF--GPLKFDVGNSPNSPFSNQFECDTITSLSDSQEQHSPSDNPSGLSPSCDSSLESNSYFHQLSPAVDSLILFSGGTSYLQNANSSQKIKHVLQELETVLMGPDEEEA 649
            MD  Q++   +T A + Y    PT  ++ N  +   PLK++  +SP +P S+QFECD +++L+++ +  S ++    +S    S LE++S + Q    +   I       Y   A S   ++H L+E+ETVLM PD ++A
Sbjct:    1 MDLHQLLKYRLTGANVVYE--IPTENNLQNSPWQANPLKYEFSDSPYTPLSSQFECDNLSALTNTPDNQSSTET---ISAQPISPLEADSSYRQAGILLQENIQVGADPLY---ATSRHNMQHALREIETVLMAPDTDDA 132
The following BLAST results are available for this feature:
BLAST of FC921716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIGR1_ORYSJ7.448e-1231.43Chitin-inducible gibberellin-responsive protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionC32108E05EF RVDevelopN Citrus clementina cDNA clone C32108E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921716 ID=FC921716; Name=FC921716; organism=Citrus clementina; type=EST; length=691bp
GGATTCGCATAAACTGTCAAACCAAAACACCGAGCTGAAAAAACGCAGAA
CACAGAAGCTACTGTTTCTTCCTTAGAAATATTCACAGGTTAATTTTTGA
AGTCCATAGTTTGAGTTATTTGTGGTGGAATTGTAAAGTTGATTGCAGTT
GTTGACCAAAGAAGGTCTAGTTGATTTGTATCTGAGGCAGAGATATTATT
TCCGGATAGACAAGAGCTGATGCTAAAACCATAATATGGACTCTCGCCAG
ATTATTGGATGTGGTGTAACTAGTGCAGGCATTTCTTACTCGTCTTCTTG
TCCTACTGTGCCTTCAATTCCCAATAGGCTGTTTGGGCCTCTGAAATTTG
ACGTTGGAAACTCGCCTAACTCACCTTTTTCAAATCAGTTTGAGTGTGAT
ACCATCACTTCATTGAGTGATAGCCAGGAGCAGCACAGCCCCTCGGACAA
TCCTTCTGGGCTCAGCCCCTCTTGCGATTCCTCACTGGAGTCCAACAGTT
ATTTTCATCAGTTAAGCCCTGCTGTGGACAGTCTAATTCTCTTTTCTGGT
GGGACTTCATATCTGCAGAATGCAAATAGTAGCCAGAAAATAAAACACGT
TTTGCAGGAGTTAGAGACTGTACTAATGGGGCCTGATGAAGAAGAAGCAG
CAAAACCAAATACTTCTTATGGGGGAAAGTAGTAGCCGCAA
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