FC921718

Overview
NameFC921718
Unique NameFC921718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.282e-35
Identity = 60/102 (58.82%), Postives = 82/102 (80.39%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y I+ + ++IMAEIYKNGPVE +FTVY DF  YKSGVY+H+TGD+MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG+P
Sbjct:  230 YSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIP 330          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.592e-35
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 334
            Y +++  +DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:  230 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 5.592e-35
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 334
            Y +++  +DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:  230 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35
Identity = 61/111 (54.95%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 334
            Y +++   DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:  230 YSVSNSERDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 316
            Y ++   ++IMAEIYKNGPVE +FTV+ DF  YKSGVYKH  GDVMGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG N CGIE ++VAG+P ++
Sbjct:  230 YSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQ 333          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.734e-34
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y +++  ++IMAEIYKNGPVE +FTV+ DF  YKSGVYKH  GD+MGGHA++++GWG  ++G  YW+ AN WN  WG +G+FKI RG N CGIE ++VAG+P
Sbjct:  230 YSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGV-ENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIP 330          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33
Identity = 56/102 (54.90%), Postives = 82/102 (80.39%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y + ++ ++IMAEIYKNGPVE +F+VY DF  YKSGVY+H++G++MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG+P
Sbjct:  230 YSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 330          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.598e-32
Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y +    ++IMAEIYKNGPVE +F VYEDF  YKSGVY+H++G+ +GGHA++++GWG  ++G  YW+ AN WN  WG  G+FKI RG + CGIE ++VAG+P
Sbjct:  231 YGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGV-ENGTPYWLAANSWNTDWGITGFFKILRGEDHCGIESEIVAGVP 331          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.393e-32
Identity = 57/100 (57.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 301
            Y + +D + I  EI K GPVE SFTVYEDF +YKSG+YKHITG+ +GGHA+++IGWG  ++   YW++AN WN  WG +GYF+I RG +EC IE +V+AG
Sbjct:  239 YNVKNDEKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALGGHAIRIIGWGV-ENKTPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVIAG 337          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.289e-31
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y +      I AEI  +GPVE +FTVYEDF  YK+GVY H TG  +GGHA++++GWGT D+G  YW++AN WN +WG +GYF+I RG+NECGIE  VV G+P
Sbjct:  233 YAVGKKVSQIQAEIIAHGPVEAAFTVYEDFYQYKTGVYVHTTGQELGGHAIRILGWGT-DNGTPYWLVANSWNVNWGENGYFRIIRGTNECGIEHAVVGGVP 333          
The following BLAST results are available for this feature:
BLAST of FC921718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CATB_PIG4.282e-3558.82Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_MACFA5.592e-3554.95Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN5.592e-3554.95Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_PONAB7.303e-3554.95Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_RAT1.627e-3458.10Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_MOUSE4.734e-3458.82Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN2.349e-3354.90Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK2.598e-3255.88Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CYSP_SCHMA3.393e-3257.00Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CPR4_CAEEL1.289e-3156.86Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC32108E07EF RVDevelopN Citrus clementina cDNA clone C32108E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921718 ID=FC921718; Name=FC921718; organism=Citrus clementina; type=EST; length=506bp
ATATAGAATCAATTCTGATCCAGAGGACATAATGGCAGAAATTTACAAGA
ATGGACCAGTTGAAGTTTCCTTCACAGTTTATGAGGATTTTGCTCACTAC
AAATCTGGGGTCTACAAACACATCACAGGCGATGTAATGGGGGGTCATGC
TGTTAAGCTTATTGGTTGGGGAACTAGTGATGATGGCGAGGATTACTGGA
TTCTCGCTAATCAGTGGAATAGAAGCTGGGGTGCGGATGGTTACTTCAAG
ATTAAAAGAGGATCAAATGAGTGTGGTATTGAAGAGGATGTGGTTGCTGG
TTTGCCTTCATCCAAAAATCTTGTCAAAGAGATTACAAGTGCAGATATGT
TTGAGGATGCTTCAGCTTGAGAGCAGACTTTGCTATACCTTCATGTTGTT
ATTTATATATCAAATGTGTAGCTATAGGGGTGTATCGTTGAACCTAAGCT
ATCAAGGCATGAAATGGGAAGCTCCCGTCTTGCAAAANAAAAAAAAAAAA
AAAAAA
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