FC921719

Overview
NameFC921719
Unique NameFC921719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921719 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = 3 
Query:  108 HNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAFDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFA 560
            ++VKV GSG+  I+ A GFG DQSVW  + P   +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFA 160
The following BLAST results are available for this feature:
BLAST of FC921719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU1.085e-3750.66Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionC32108E08EF RVDevelopN Citrus clementina cDNA clone C32108E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921719 ID=FC921719; Name=FC921719; organism=Citrus clementina; type=EST; length=710bp
GCAAGACAAAAACGCTTTCACTAATCACTTGACAACACAAAAGAAAATAA
AAGAAAAGAAAGCTCCGCAGATTCAGGCGAGGCGAAATGGGAATCGTGGA
AGAAGCTCACAACGTGAAAGTGACGGGGTCAGGGGAGCAAGTGATAGTGT
TGGCTCACGGCTTCGGCACCGACCAGTCGGTGTGGAAGCACCTCGTGCCT
CATCTCGTCGACGATTACCGCGTCGTTTTGTATGACAACATGGGCGCTGG
CACCACCAATCCCGACTACTTTGACTTCAACAGATACTCCACCCTCGAAG
GCTATGCCTTCGATTTGCTTGCTATTTTAGAAGAGCTGCAAATTGACTCT
TGTATTCTCGTCGGTCACTCTGTTTCCGCCATGATTGGCGCCATCGCCTC
CATCTCCCGCCCTGATCTCTTCACTAAACTCGTCATGATCTCCGGCTCTC
CTAGGTATCTCAATGATGTGGATTACTACGGAGGATTTGAGCAAGAGGAG
CTGGATCAGCTTTTTGAAGCAATGAGGTCAAATTACAAGGCATGGTGCTC
TGGATTCGCCCCGCTAGCTGTCGGCGGGGACATGGACTCGGTGGCTGTTC
AAGAATTTAGCCGAACCTTATTCACATGAGACCAGACATAGCCTTGAGTG
TGGCACAAACCATTTTCCAAGTGACATGAGGCAAATTCTCAGCCTTGTCA
GTGTCCCATG
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