FC921725

Overview
NameFC921725
Unique NameFC921725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.775e-66
Identity = 122/182 (67.03%), Postives = 149/182 (81.87%), Query Frame = 2
Query:  113 NKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            NKQVI  ++V+GFPKESD    T ++ L+VPEGSK +VL+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEEYS+I    H+  KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPKKGE VYVSAASGAVGQLVGQFAK++GCYVVGS
Sbjct:    4 NKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGS 184          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.289e-63
Identity = 119/184 (64.67%), Postives = 148/184 (80.43%), Query Frame = 2
Query:  113 NKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            NKQVIL +YV+GFP ESD    T ++ L+VPEG+ ++VL+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEEYS+I    H   KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPK+GE VYVSAASGAVGQLVGQ AK++GCYVVGS
Sbjct:    5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGS 186          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 2
Query:   95 GEEAVGNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVG 649
            G++   N++ +L++   G P   + ++        V    +  VLL+ +YLS DPYMRGRMS  D+PS+    + G  + G  VS+V++S HP+Y+  D V G + W++Y  I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVG 179          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 82/179 (45.81%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  116 KQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVL-DSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVG 649
            +Q+ L+    G P   D +  T    + VPE  +  VL+K LY+S DPYMRGRM   D  S+V  F   + LSG  +++V+ D  H   KK D+V G  SW+E+S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG
Sbjct:    6 QQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVG 175          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 76/191 (39.79%), Postives = 106/191 (55.50%), Query Frame = 2
Query:  107 VGNKQVILSNYV---TGFPKESD-MKIITGSINLKVPEGSKDT-VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            V N  VI+  Y+    G+P   + +       +L+  +  ++T VLLKN+Y S DPY+R RM      S++     G+P     V+KV+ ST   YK    V  ++ WEEY+ + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK +G +VVGS
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGS 191          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 70/182 (38.46%), Postives = 103/182 (56.59%), Query Frame = 2
Query:  116 KQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            K   L  +  G P +SD ++ T    +++P  +   VLL+ L+LS DPYMR    +L +         G+ + G  V++V++S +P +    LV   + W  +S I   Q L K+L      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+
Sbjct:    5 KNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHS-ISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGA 172          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 72/185 (38.92%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  107 VGNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            V  K   L  +  G+P  SD ++ T  +    P      VLL+ L+L+ DPYMR    +L +         G+ + G  V+KV++S +    K  +V     W  +S I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHS-ISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGA 172          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  116 KQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            K   L  +  G+P  SD ++ T    +++P      VLL+ LYL+ DPYMR             S   G+ + G  V++V++S +  +    +V   + W  +S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+
Sbjct:    5 KSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGT 172          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.984e-24
Identity = 71/182 (39.01%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  116 KQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKI---LDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            K   L  +  GFP + + ++ T     ++P  +   VLL+ L+LS DPYMR    KL +         G+ + G  V++V++S +  + K  +V  L  W  +S I     L K+       +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+
Sbjct:    5 KSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGT 172          
BLAST of FC921725 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  128 LSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSP--QHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGS 652
            L  +  GFP +S+ ++ T     ++P  +   VLL+ L+LS DPYMR    KL +         G+ + G  V++V++S +  +    +V  L  W  +S+      + L       +PLS   G +GMPGLTAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+
Sbjct:    9 LKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGT 172          
The following BLAST results are available for this feature:
BLAST of FC921725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH2.775e-6667.03Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.289e-6364.67Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YNCB_ECOLI9.323e-3040.54Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU6.043e-2945.81Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO1.393e-2539.79Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RABIT3.431e-2438.46Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_HUMAN5.853e-2438.92Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_BOVIN7.645e-2439.34Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_MOUSE9.984e-2439.01Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_RAT8.452e-2337.85Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108F04EF RVDevelopN Citrus clementina cDNA clone C32108F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921725 ID=FC921725; Name=FC921725; organism=Citrus clementina; type=EST; length=653bp
GAAACGCGTTTCACATTTTCACTCTCTCTCTATAAATAAATACGCACATA
AAATTTCTCACCATCCAAAAACAAAATCTACATAAAAAATGGCGGGTGAA
GAAGCAGTGGGCAACAAGCAGGTGATTCTGAGCAACTACGTGACAGGGTT
TCCCAAGGAATCAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGG
TGCCAGAGGGCTCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCC
TGTGATCCTTACATGAGAGGACGTATGAGTAAGCTTGATAAGCCTTCGTT
TGTTGCCTCCTTCAACCCTGGCGAGCCCTTGAGCGGATATGGAGTGTCCA
AAGTGTTGGATTCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGG
GGCTTAACCAGTTGGGAGGAGTACAGTCTCATCCAATCACCACAACATCT
GATTAAAATTCTGGATACAAATGTGCCTCTGTCATACTATACTGGGATTC
TTGGTATGCCTGGTTTGACTGCATATGGTGGTTTATATGAGCTTTGCTCT
CCTAAGAAAGGAGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGG
TCAGCTAGTTGGGCAATTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAA
GTG
back to top