FC921727

Overview
NameFC921727
Unique NameFC921727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921727 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.373e-74
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2
Query:  137 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDFERCWDV 730
            EVLTV+P VCK+W RAV GPYCWQEIDIE WSNR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+   CWDV
Sbjct:   29 EVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDV 227          
BLAST of FC921727 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 65/200 (32.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:  137 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDFERCWDV 730
            E+L     VC+SWRR    P  W++ID+    +    D+ L+ M    + RS G L  + +       + + IA  + +L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LD  RC++V
Sbjct:   38 EILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNV 230          
BLAST of FC921727 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 59/200 (29.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  137 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDFERCWDV 730
            E+L     VCK W R    P  W++IDI+  ++R    + L+ M    + RS G L ++ +     + +   IA+ + +L++L L R   ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LD  +C+++
Sbjct:  200 EILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNI 398          
BLAST of FC921727 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 64/210 (30.48%), Postives = 97/210 (46.19%), Query Frame = 2
Query:  161 VCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHL---------DRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------PLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDFERC 721
            V KSW      PY W   D+E W +   +  HL         D M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+           P +  D   Q  D EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LD   C
Sbjct:   35 VQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC 243          
BLAST of FC921727 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 61/203 (30.05%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  137 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITR----SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLR-LPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDFERCWDV 730
            E+L     VCKSWRR    P  W++IDI    N      L  ++E L  R    S G L ++ +  L N    + IA+ + +L+ L  +  + +    V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A AIA TMP L+ L++  + +S   +  IL  C  L+ L   +C ++
Sbjct:   40 EILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNI 238          
The following BLAST results are available for this feature:
BLAST of FC921727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FBW2_ARATH3.373e-7468.84F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
SKI19_ARATH1.539e-1832.50F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH3.790e-1729.50Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
SKIP1_ARATH1.032e-1430.48F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
FBL9_ARATH4.336e-1330.05Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC32108F06EF RVDevelopN Citrus clementina cDNA clone C32108F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921727 ID=FC921727; Name=FC921727; organism=Citrus clementina; type=EST; length=731bp
GGGTTTTTTGTAGTTTTCTTTTCCTTTCTCTTTCTCTCTCTCTTTCTCTC
TATCACTCACTGACCATTTTGCCTTTCGTTGCTCTCTCTCTCTCTCTGTC
TTTTGCGTTTGCCCTACGTTTCAGGCGGACGAACCGGAGGTATTAACCGT
GATACCAGGGGTTTGCAAATCATGGCGTAGAGCAGTAATTGGACCATATT
GCTGGCAAGAGATTGACATTGAGGAATGGAGTAATCGGTGCCAACCGGAC
CACCTCGATCGGATGGTTGAAATGTTGATCACAAGAAGTTCTGGATCTCT
CCGCAAGCTCTGTGTTTCTGGCCTGCACAATGATATGATGTTTTCCTTGA
TTGCAGAAAATGCTGGTTCCCTTCAGACATTGCGACTTCCAAGAAGTGAA
ATGAGTGACTCCATAGTGGCTCAGATAGCTGGAAGGTTGTCTGCGGTCAC
TTTCTTGGATTTGAGCTATTGCAGTAAAATTGGTGCTCCTGCTTTGGAGG
CCATAGGAAAACACTGTAAATTGCTTGTGGTTCTATGCCGAAACATGCAC
CCATTAGATACAGCTGACAAGCTCTCACAAGATGACGAGGCCAATGCCAT
TGCCTCAACGATGCCAAAACTTAAGCGACTTGAGATGGCTTACCATGTTA
TCAGCACAGAAATTGTTCTTAAGATCCTTTCGAGCTGTGCCCTGCTAGAG
TTTTTGGATTTTGAGAGGTGCTGGGATGTGA
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