FC921728

Overview
NameFC921728
Unique NameFC921728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.254e-30
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L EAY+RC ++CAEYAK           ER K IWA+Y WC+RTDELVDGPNA  ++PAALDRWE+RL D+F+G P D+LDAAL+DTVSKF
Sbjct:  129 LSEAYDRCSEVCAEYAKTFYLGTMLMTPERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEDRLEDVFSGRPFDMLDAALSDTVSKF 219          

HSP 2 Score: 21.9422 bits (45), Expect = 7.254e-30
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  675 IKPFRDMIKG 704
            I+PFRDMI+G
Sbjct:  223 IQPFRDMIEG 232          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.715e-29
Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  193 INSAARSELNINIPREKNSIILPRLSTQGMLQSDVHICEIAERQS-LANNLSDKGDAFRSKPQL----DAMFLDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            IN     + N        S IL   S +  + S+  + ++  RQ+ L        +    KP +    +   L EAY+RC ++CAEYAK           ER + IWA+Y WC+RTDELVDGPNA  ++PAALDRWE RL D+FNG P D+LD AL+DTVS F
Sbjct:   45 INRGGGKQTNNGRKFSVRSAILATPSGERTMTSEQMVYDVVLRQAALVKRQLRSTNELEVKPDIPIPGNLGLLSEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIYVWCRRTDELVDGPNASYITPAALDRWENRLEDVFNGRPFDMLDGALSDTVSNF 207          

HSP 2 Score: 21.9422 bits (45), Expect = 2.715e-29
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  675 IKPFRDMIKG 704
            I+PFRDMI+G
Sbjct:  211 IQPFRDMIEG 220          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.253e-28
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L EAY+RC ++CAEYAK           +R + IWA+Y WC+RTDELVDGPNA  ++P ALDRWE RL DIFNG P D+LDAAL+DTVS+F
Sbjct:   13 LSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFNGRPFDMLDAALSDTVSRF 103          

HSP 2 Score: 21.557 bits (44), Expect = 2.253e-28
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  675 IKPFRDMIKG 704
            I+PFRDM++G
Sbjct:  107 IQPFRDMVEG 116          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.946e-28
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L EAY+RC +IC EYAK          +ER + IWA+Y WC+RTDELVDGPNA  ++P ALDRWE+RL D+F G P D+LDAAL+DT+S+F
Sbjct:  115 LKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRF 205          

HSP 2 Score: 22.3274 bits (46), Expect = 4.946e-28
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  669 LHIKPFRDMIKG 704
            + I+PFRDMI+G
Sbjct:  207 IDIQPFRDMIEG 218          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 55/91 (60.44%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L+EAY+RC ++CAEYAK           ER K IWA+Y WC+RTDELVDGPNA  ++P ALDRWE RL ++F G P D+LDAAL DTV+KF
Sbjct:  133 LNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIYVWCRRTDELVDGPNASHITPTALDRWEARLEELFQGRPFDMLDAALADTVTKF 223          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.406e-27
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L EAY+RC ++CAEYAK           ER K IWA+Y WC+RTDELVDGPNA  ++P ALDRWE RL D+F G P D+LDAAL DTV+++
Sbjct:  128 LGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARY 218          

HSP 2 Score: 21.9422 bits (45), Expect = 2.406e-27
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  675 IKPFRDMIKG 704
            I+PFRDMI+G
Sbjct:  222 IQPFRDMIEG 231          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L+EAY+RC ++CAEYAK           ER + +WA+Y WC+RTDELVDGPNA  ++P ALDRWE+RL D+F+G P D+ DAAL DTVS +
Sbjct:  107 LNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTY 197          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            L +AY+RC ++CAEYAK           ER + IWA+Y WC+RTDELVDG NA  ++P+ALDRWE RL D+F G P D+ DAAL+DTVS+F
Sbjct:  125 LKDAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGHNASHITPSALDRWEARLEDLFAGRPYDMFDAALSDTVSRF 215          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: CRTB_SYNY3 (Phytoene synthase OS=Synechocystis sp. (strain PCC 6803) GN=crtB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.354e-20
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  394 LDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            ++EAYE CR++ A+YAK            + + IWA+Y WC+RTDELVDGP A   +P  LD WE RL  IF G P D  D AL DT+  F
Sbjct:   45 VEEAYEICRQVTAQYAKTFYLGTLLMPPAKRRAIWAIYLWCRRTDELVDGPQAATTTPETLDHWERRLEGIFAGQPQDDADVALVDTLETF 135          

HSP 2 Score: 22.3274 bits (46), Expect = 1.354e-20
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  669 LHIKPFRDMIKG 704
            L I+PFRDMI G
Sbjct:  137 LDIQPFRDMIAG 148          
BLAST of FC921728 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.295e-20
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  367 SKPQLDAMFLDEAYERCRKICAEYAKXXXXXXXXXXKERPKVIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLXDIFNGHPNDILDAALTDTVSKF 666
            ++P      L EAYE CR+I A YAK          + + + IWA+Y WC+RTDELVDGP A   + A LD WE RL  +F G P D  D AL DT++++
Sbjct:    7 ARPSRALASLSEAYEECRQITARYAKTFYLGTLLMPEAKRQAIWAIYVWCRRTDELVDGPQAAQTNFATLDAWERRLERLFAGEPEDDCDVALVDTLARY 106          

HSP 2 Score: 23.0978 bits (48), Expect = 2.295e-20
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  669 LHIKPFRDMIKG 704
            L I+PFRDMI+G
Sbjct:  108 LDIQPFRDMIEG 119          
The following BLAST results are available for this feature:
BLAST of FC921728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSY_CAPAN7.254e-3063.74Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY1_SOLLC2.715e-2942.33Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY2_SOLLC2.253e-2861.54Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
PSY_MAIZE4.946e-2859.34Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY_CUCME1.010e-2760.44Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH2.406e-2759.34Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_DAUCA1.116e-2657.14Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
PSY_NARPS9.450e-2657.14Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
CRTB_SYNY31.354e-2048.35Phytoene synthase OS=Synechocystis sp. (strain PCC... [more]
CRTB_SYNE72.295e-2045.00Phytoene synthase OS=Synechococcus elongatus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32108F07EF RVDevelopN Citrus clementina cDNA clone C32108F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921728 ID=FC921728; Name=FC921728; organism=Citrus clementina; type=EST; length=706bp
GATACCTTACATAATCTGTGGGGTAGCAAGTAAAATCGTCCTACATTCAT
CACCTTGTTGTGCTGAATCTTTGAAGAGAGAAACAAAAAAAGGGGGAAAA
ATTGAAGCTTCTGCAAAATGTGTTCAACTTTTTCACTTGCAGCTAAGCCA
TCCATCGGAGAGAGCAGAGGCAAAATATGGAGTCTACAAGTTATCAATTC
AGCGGCAAGATCTGAATTGAACATAAACATCCCCAGAGAGAAAAACTCGA
TCATTCTCCCCAGATTATCAACACAAGGCATGCTTCAGAGTGATGTACAT
ATATGCGAAATCGCGGAAAGACAGTCACTGGCTAACAATTTATCAGACAA
GGGAGATGCCTTCAGAAGCAAGCCACAGCTCGATGCTATGTTTCTTGATG
AAGCTTATGAGAGATGCAGGAAAATTTGTGCGGAATATGCAAAGACTTAT
TACTTGGGAACTTTGTTGCTGACAAAAGAGAGACCGAAAGTCATATGGGC
GGTTTACGCTTGGTGCAAGAGAACTGATGAGCTAGTTGATGGCCCGAATG
CATTTTGTGTAAGCCCTGCTGCTCTTGATAGATGGGAAGAGAGACTACNA
GATATCTTCAATGGGCACCCTAATGACATTCTTGATGCTGCACTTACTGA
TACTGTTTCCAAGTTCATTTACACATCAAGCCTTTTAGGGACATGATTAA
GGGCAT
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