FC921729

Overview
NameFC921729
Unique NameFC921729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.127e-23
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  499 GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            G  L F NDLD+  +G  VYFTDSS+ +QRR+++ L+  A   GRVL+YD  TK+ TVL+ NL
Sbjct:  194 GRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENL 256          

HSP 2 Score: 60.8474 bits (146), Expect = 4.127e-23
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = 2
Query:    2 GGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 484
            G L++ LL ++  L+   H      P+ +S  +  PP  L+    +    L+ ++  F +Q+ GPES+A    G   YTG ADG+I+  +G   T  A            KP      + E  CGRPLG+R     G L++ADAY GL KV P  G  T+L
Sbjct:   47 GCLILPLLVVFFLLESPIH------PELLS--LSEPP--LMSGCYEPNFKLREAQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSITVIARLG---------KPPCDGSREQEPSCGRPLGIRVGPN-GTLFVADAYLGLFKVNPVTGEVTNL 185          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.618e-22
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  191 GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 484
            GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++  LC+          N   CGRP G+ F+ KTGDLY+ADA  GL  +   GGLA  +
Sbjct:   40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCD----GALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKI 135          

HSP 2 Score: 50.8322 bits (120), Expect = 2.618e-22
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1
Query:  499 GVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLS 687
            G P  F + LD+D   G VYFT  S+ +  R+ ++ V + + TG+  KYDP+ K  TVL+  LS
Sbjct:  141 GKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLS 204          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.269e-21
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  191 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 484
            GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++    C+   I  +       CGRP G+ F++KTGDLY+ADA  GL  + P GGLAT +
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGT-IGTALAGR---CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKI 133          

HSP 2 Score: 48.1358 bits (113), Expect = 1.269e-21
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  496 EGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLS 687
            +G P +F + LD+D   G VYFT  S+ +     +  +   + TG++ KYDP+TK  TVL+  LS
Sbjct:  138 DGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLS 202          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.725e-21
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  484 STEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            +T  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L
Sbjct:  139 ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 206          

HSP 2 Score: 58.151 bits (139), Expect = 4.725e-21
Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 2
Query:  194 PESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNN-RPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 484
            P S  FD   +G YT V DGR++ ++G    + DFA+ S       C     A    +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT L
Sbjct:   43 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQL 138          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.726e-21
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  484 STEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            +T  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L
Sbjct:  137 ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 204          

HSP 2 Score: 58.151 bits (139), Expect = 4.726e-21
Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 2
Query:  194 PESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNN-RPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 484
            P S  FD   +G YT V DGR++ ++G    + DFA+ S       C     A    +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT L
Sbjct:   41 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQL 136          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.017e-20
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  481 TSTEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            T T  EG  L F NDL +  +G  +YFTDSS+ +QRR+F+ LV    D GR+L+YD  TK+  VL+  L
Sbjct:  187 TKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGL 255          

HSP 2 Score: 53.5286 bits (127), Expect = 5.017e-20
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  107 PPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG 469
            PP  L+  V +  N LQ +E  + NQ+ GPES+    +G   +TG ADG+IL  +  +    A   +     C          ++E  CGRPLG+R       L++ADAY+GL +V P  G
Sbjct:   74 PP--LLTGVLEPNNKLQKAERLWENQLVGPESIV--NIGDVLFTGTADGKILKIEDGEVQTVARIGHGP---CGTP-------EDEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGTG 179          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.427e-19
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  481 TSTEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            + T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  T++  VLL  L
Sbjct:  188 SETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQL 256          

HSP 2 Score: 53.5286 bits (127), Expect = 2.427e-19
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  152 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 460
            L+ +E  F NQ+ GPES+A   +G   +TG ADGR++  +  +    A   +   +  + +P+          CGRPLG+R     G L++ADAY GL +V P
Sbjct:   88 LRQAERLFENQLVGPESIAH--IGDVMFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPV----------CGRPLGIRAG-PNGTLFVADAYKGLFEVNP 177          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.428e-19
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  481 TSTEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            + T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV  A D GR+L+YD  TK+  VLL  L
Sbjct:  187 SETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQL 255          

HSP 2 Score: 51.2174 bits (121), Expect = 2.428e-19
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 2
Query:    8 LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPE 463
            +  L+LA+   +  L    + E P D  S     PP+     V      L+ +E  F NQ+ GPES+    +G   +TG ADGR++  +  +    A   +   +  + +P           CGRPLG+R     G L++ DAY GL +V P+
Sbjct:   40 MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMF--GVLHPNTKLRQAERLFENQLSGPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPT----------CGRPLGIRAG-PNGTLFVVDAYKGLFEVNPQ 177          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 3.164e-19
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  481 TSTEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            + T  EG  + F NDL I  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  TK+  VLL  L
Sbjct:  148 SETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQL 216          

HSP 2 Score: 51.9878 bits (123), Expect = 3.164e-19
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 2
Query:    8 LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPE 463
            +  L+LA+   +  L    + E P D  S     PP+     V      L+ +E  F NQ+ GPES+    +G   +TG ADGR++  +  +    A   +   +  + +P           CGRPLG+R     G L++ DAY GL +V P+
Sbjct:    1 MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMF--GVLQPNTKLRQAERLFENQLNGPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPT----------CGRPLGIRVG-PNGTLFVVDAYKGLFEVNPQ 138          
BLAST of FC921729 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.527e-18
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  481 TSTEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL 684
            + T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ L+    D GR+L+YD  TK+  VLL +L
Sbjct:  187 SETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHL 255          

HSP 2 Score: 51.9878 bits (123), Expect = 1.527e-18
Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 2
Query:  152 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFAFTSNNRPELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 460
            LQ +E  F NQ+ GPES+A   +G   +TG ADGR++   +G   T   F S      C  +        +E  CGRPLG+R     G L++ DAY GL +V P
Sbjct:   87 LQQAERLFENQLVGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSGP----CKTR-------DDEPACGRPLGIRAG-PNGTLFVVDAYKGLFEVNP 176          
The following BLAST results are available for this feature:
BLAST of FC921729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APMAP_SALSA4.127e-2352.38Adipocyte plasma membrane-associated protein OS=Sa... [more]
STS3_ARATH2.618e-2244.00Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STS1_ARATH1.269e-2144.00Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE4.725e-2144.12Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA4.726e-2144.12Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
APMAP_CHICK5.017e-2047.83Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_HUMAN2.427e-1943.48Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_MOUSE2.428e-1946.38Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_RAT3.164e-1946.38Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN1.527e-1843.48Adipocyte plasma membrane-associated protein OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC32108F08EF RVDevelopN Citrus clementina cDNA clone C32108F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921729 ID=FC921729; Name=FC921729; organism=Citrus clementina; type=EST; length=689bp
GGGGGGGTTGGTGATTTTGCTTCTGGCCATGTACTGTGGCCTCGACCCTT
TGAAGCACAGTGCGATTTCTGAGTTCCCTGACTTTGTGTCTCACAAAGTT
GACATGCCGCCGTGGTCACTGATTCCTACAGTGAAAGATGACAAGAACTT
GCTTCAGAATTCGGAAATCAAGTTCTTGAACCAAATTCAGGGCCCCGAGA
GCATGGCTTTTGACCCTCTTGGCCGTGGACCTTATACTGGTGTTGCTGAT
GGCAGAATTCTCTTCTGGGATGGCCTTAAATGGACTGATTTTGCTTTTAC
TTCCAACAACAGGCCGGAACTATGTAATCCGAAACCAATTGCCATGAGTT
ATCTGAAGAATGAGCACATCTGTGGCAGGCCTTTGGGGCTCCGATTTGAC
AAGAAAACTGGTGATTTATACATTGCAGATGCATATTTTGGTCTGATGAA
GGTCGGTCCGGAAGGTGGATTGGCAACATCACTTCAACTGAAGCAGAAGG
TGTGCCACTGAGGTTCACTAATGATCTAGACATTGATGATGAAGGGAATG
TTTACTTTACTGACAGCAGCACCAATTATCAGAGGCGGAATTTCATGCAG
TTGGTTTTCTCTGCAGAAGATACTGGTAGGGTTCTAAAGTATGATCCAAC
TACNAAACAGACCACTGTCCTTTTGAGGAATCTTTCATT
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