FC921736

Overview
NameFC921736
Unique NameFC921736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig597 contig Ccv1_Contig597:352..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921736 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.528e-76
Identity = 151/242 (62.40%), Postives = 172/242 (71.07%), Query Frame = 3
Query:   45 KMLGYETVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFNFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISAMVFCGYIVYDTDXLIKRFTYDDYILGSVTLYLDILNL 755
            K  GY +V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDF+FLGP              +QMFFPLG TS AVYGG SA+VFCGYIVYDTD LIKRFTYD+YIL SV LYLDILNL
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNL 243          
BLAST of FC921736 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 61/199 (30.65%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  159 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFNFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISAMVFCGYIVYDTDXLIKRFTYDDYILGSVTLYLDILNL 755
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   DF   G               +++FF    T   V   + A++FCG+I+YDT  L+ R + ++Y++ +++LY+DI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINL 224          
BLAST of FC921736 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 3
Query:  159 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFNFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISAMVFCGYIVYDTDXLIKRFTYDDYILGSVTLYLDILNL 755
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   DF+  G               ++ FF        V     A++FCG+I+YDT  L+ + + ++Y+L +++LYLDI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINL 224          
BLAST of FC921736 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 58/199 (29.15%), Postives = 91/199 (45.73%), Query Frame = 3
Query:  159 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFNFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISAMVFCGYIVYDTDXLIKRFTYDDYILGSVTLYLDILNL 755
            +R  F+RKVY ILTAQ+ +T+L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DF+ LG               +  F P        + G   +VFCGYI++DT  ++ R++ +++I+ S+ LYLD +NL
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINL 249          
BLAST of FC921736 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 58/215 (26.98%), Postives = 93/215 (43.26%), Query Frame = 3
Query:  114 DGERLYPG-LSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFNFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISAMVFCGYIVYDTDXLIKRFTYDDYILGSVTLYLDILNL 755
            D + + PG +      +R  F+RKV GI+  Q++ T  + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DF+                   QMFF +      V     A +FC  +V D D ++ RF+ +DYI   V+LY+DILNL
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNL 263          
The following BLAST results are available for this feature:
BLAST of FC921736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH6.528e-7662.40BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE4.909e-2330.65Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN1.337e-2030.65Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO1.059e-1729.15Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL1.870e-1426.98Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionC32108G04EF RVDevelopN Citrus clementina cDNA clone C32108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921736 ID=FC921736; Name=FC921736; organism=Citrus clementina; type=EST; length=757bp
GAATAAAAAAAAATCACGAAAATTCAAAAATCAAAATCGCTTGAAAGATG
TTGGGCTACGAGACGGTGAGGAGCAAAGATGACGGCAAATTCGAGGTAGA
TCTGGAAGGCGGAGATGGGGAGAGGCTTTACCCCGGTCTCAGCTACGGCG
AGAACCAGCTCCGATGGGGTTTCATTCGCAAGGTGTACGGCATCTTGACG
GCCCAGATCGTTTTGACCACCTTGGTCTCCTCAATCACCGTTCTTTACAA
TCCCATCAACGATCTTCTCAGGGGCAATTCTGGCCTTCTCCTCTTCCTCT
CCATCCTCCCCTTCATCCTGTTATGGCCACTGCATGTGTATCATCAGAAG
CACCCTGTGAACTTGATTGTCCTTGGTCTGTTCACTGTATCTCTGAGTCT
TCCTGTTGCTGTAAGCTGCGCTAATACCGATGGTAGGATTGTGCTTGAAG
CATTAATTCTGACCTCGGCTGTGGTTTGTTCTTTAACTGGGTACACTTTC
TGGGCCTCTAAGAAGGGCAAAGACTTCAACTTTCTTGGACCAATTCTATT
CACCAGCCTCATAATCCTCATTCTGACTAGCTTTATGCAGATGTTCTTTC
CTCTGGGATCTACATCCACTGCTGTTTATGGTGGAATTAGTGCAATGGTC
TTCTGTGGATACATCGTTTACGACACCGACNACTTGATCAAGCGCTTCAC
ATATGATGATTATATCTTGGGCTCTGTCACTCTCTATCTGGATATTCTGA
ACCTTTT
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