FC921737

Overview
NameFC921737
Unique NameFC921737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14380 contig Ccv1_Contig14380:151..462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921737 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = -3
Query:   14 KLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPAAIVVVGGFDPLQDWQ 271
            K++G I + P FGG+ERT+SE  L G   V+++  DW W+A+LPEG +R+HPA N FGP    + GVN P ++VVV G D +QDWQ
Sbjct:  210 KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQ 295          
BLAST of FC921737 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = -3
Query:    5 VAVRGNECNFCKWKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPAAIVVVGGFDPLQDWQKRH 310
            VAVR  E       ++G I + P FGG ERTESE RL G   V++   DW W+AFLPEG +R HPA + FGP +  + G++ P ++VVV G D +QDWQ ++
Sbjct:  198 VAVRAVESRI---DVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKY 296          
BLAST of FC921737 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = -3
Query:   14 VAVRGNECNFCKWKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPAAIVVVGGFDPLQDWQ 310
            VA+R  E       ++G I + P FGG ERTESE  L G   V++   DW WKAFLPEG +R HPA N F P    + GV+ P ++VVV G D ++DWQ
Sbjct:  200 VALRAGESGI---DVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQ 295          
BLAST of FC921737 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = -3
Query:   14 KLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPAAIVVVGGFDPLQDWQ 271
            K+ G I +   FGG ERTESE RL G   V+++  DW WKA+LPE ++R+HPA N FGPN   + G+    ++++V G D   D Q
Sbjct:  217 KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQ 302          
The following BLAST results are available for this feature:
BLAST of FC921737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH4.204e-2251.16Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH1.598e-2147.06Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.035e-2047.47Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.021e-1645.35Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32108G05EF RVDevelopN Citrus clementina cDNA clone C32108G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921737 ID=FC921737; Name=FC921737; organism=Citrus clementina; type=EST; length=312bp
CTCAGTGCCTCTTCTGCCAATCTTGTAGAGGATCAAACCCACCTACTACT
ACGATCGCTGCCGGAATGTTTACGCCGGAAATATCAACGGCATTCGGCCC
AAAAGCATTCGTCGCCGGATGGTTCCGATTAGACCCTTCTGGCAAAAAAG
CTTTCCACATCCAGTCAGTACGCTCCATTGAGACCAATGGAGCTCCAACG
AGCCTTGTTTCCGATTCAGTCCTCTCTTCTCCTCCGAAAAATGGCTGAAT
CGCTATAACTCCAATGAGCTTCCACTTGCAAAAGTTACACTCATTACCTC
GCACTGCCACGT
back to top