FC921747

Overview
NameFC921747
Unique NameFC921747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14380 contig Ccv1_Contig14380:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 105/226 (46.46%), Postives = 144/226 (63.72%), Query Frame = -3
Query:   26 NSKGFDDYCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLK-RCFVAGDSAGGNLAHNVAVRANECNFSKLKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFYFFPELPEGSLLINDVKDFI 700
            NS  +D  CRRL G   AVV+SVNYR APE+RYPC Y+DG  VLK++++         +  D K R F+AGDS+GGN+ HNVAVRA E   S++ ++G I + P FGG ERTESE RL G   V++   DW W+AFLPEG +R HPA + FGP +  + G++ P ++VVV G D +QDWQ ++ EGLKK G+E  L+       GFY  P       +++++  F+
Sbjct:  121 NSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSS----SWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFV 339          
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.206e-49
Identity = 97/227 (42.73%), Postives = 139/227 (61.23%), Query Frame = -3
Query:   20 NSKGFDDYCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLKRCFVAGDSAGGNLAHNVAVRANECNFSKLKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFYFFPELPEGSLLINDVKDFIQN 700
            NS  +D +CRRL      VV+SV+YR +PEHRYPC Y+DG + L ++ + +       +   +   ++AGDS+GGN+AHNVAVRA       +K++G I + P FGG+ERT+SE  L G   V+++  DW W+A+LPEG +R+HPA N FGP    + GVN P ++VVV G D +QDWQ  + +GLKK G E  L+       GFYF P       L+ ++  F+ +
Sbjct:  123 NSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVYV---YLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVHS 343          
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.969e-48
Identity = 100/226 (44.25%), Postives = 135/226 (59.73%), Query Frame = -3
Query:   26 NSKGFDDYCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLK-RCFVAGDSAGGNLAHNVAVRANECNFSKLKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFYFFPELPEGSLLINDVKDFI 700
            NS  +D  CRRL G    VV+SVNYR APE+ YPC Y+DG   L ++++         +  D K   F+AGDS+GGN+AHNVA+RA E   S + ++G I + P FGG ERTESE  L G   V++   DW WKAFLPEG +R HPA N F P    + GV+ P ++VVV G D ++DWQ  + EGLKK G+E  L+       GFY  P       +++++  F+
Sbjct:  123 NSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSR----SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFV 341          
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 89/221 (40.27%), Postives = 130/221 (58.82%), Query Frame = -3
Query:   26 FDDYCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLKRCFVAGDSAGGNLAHNVAVRANECNFSKLKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFYFFPELPEGSLLINDVKDFI 688
            +D  CRR       VV+SVNYR APEHRYPC Y+DG   LK++ ++        A A   R F++GDS+GGN+AH+VAVRA +     +K+ G I +   FGG ERTESE RL G   V+++  DW WKA+LPE ++R+HPA N FGPN   + G+    ++++V G D   D Q  + + L++ G    +++  N   GFY  P       ++ ++ DF+
Sbjct:  134 YDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQA---RVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFL 348          
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: YR526_MIMIV (Putative alpha/beta hydrolase R526 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R526 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 53/222 (23.87%), Postives = 90/222 (40.54%), Query Frame = -3
Query:   35 YCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLKRCFVAGDSAGGNLAHNVAVRANECNFSKLKLIGVIAIQPFFGGEERTESETRLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFYFFPELPEG-------SLLINDVK 679
            +   +  +    VI VNY LAPE ++P Q  +  D L +  +   +        D     V GDS GGN+A  +A+   E    + K    I + P       T+S       P +S +  +W ++ +     N   P+ +    NA D S   +P T++VV   D L+D  + +   L   G     +    T+H F     L +         +++N++K
Sbjct:  126 FVSEIVNKANVTVIFVNYSLAPEKKFPTQIVECYDALVYFYSNAQRYN-----LDFNNIIVVGDSVGGNMATVLAMLTREKTGPRFKY--QILLYPVISAAMNTQSYQTFENGPWLSKKSMEWFYEQYTEPNQNLMIPSISPI--NATDRSIQYLPPTLLVVDENDVLRDEGEAYAHRLSNLGVPTKSVRVLGTIHDFMLLNPLVKSPATKLTLEIVVNEIK 338          
BLAST of FC921747 vs. ExPASy Swiss-Prot
Match: YKN2_SCHPO (AB hydrolase superfamily protein B1A11.02 OS=Schizosaccharomyces pombe GN=SPAPB1A11.02 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 58/217 (26.73%), Postives = 97/217 (44.70%), Query Frame = -3
Query:   68 DDYCRRLAGEIPAVVISVNYRLAPEHRYPCQYEDGIDVLKFIDNEISKIEDFPACADLKRCFVAGDSAGGNLAHNVAVRANECNFSKLK--LIGVIAIQPFFGGEERTESET--------RLVGAPLVSMERTDWMWKAFLPEGSNRNHPATNAFGPNAVDISGVNIPATIVVVGGFDPLQDWQKRHYEGLKKCGKEAYLIEYPNTVHGFY-FFPEL 685
            D   + L  +   V +SV+YRLAPE ++P  + D ID  K++ + I K+   P     +  F+ G SAGGN    V+V ++     K+K  L G+  + P        + ET          + AP+++ +  D  ++ + P       P +    P        ++P +     G+DPL+D    + + LK  G E  LI Y    H F+ ++P L
Sbjct:  110 DSLFKILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVASNIEKLGANPK----RGFFLGGASAGGNF---VSVLSHIARDEKIKPELTGLWHMVPTLIHPADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPT------PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPML 313          
The following BLAST results are available for this feature:
BLAST of FC921747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GI1L3_ARATH5.782e-5246.46Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.206e-4942.73Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.969e-4844.25Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ1.864e-4240.27Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YR526_MIMIV1.303e-1123.87Putative alpha/beta hydrolase R526 OS=Acanthamoeba... [more]
YKN2_SCHPO8.446e-1126.73AB hydrolase superfamily protein B1A11.02 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionC32108H05EF RVDevelopN Citrus clementina cDNA clone C32108H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921747 ID=FC921747; Name=FC921747; organism=Citrus clementina; type=EST; length=702bp
ATTATCATTTGGCCGATTGATTTTGTATAAAATCCTTGACGTCATTAATG
AGCAAAGATCCCTCGGGCAACTCAGGAAAAAAATAGAAGCCATGAACCGT
ATTCGGATACTCAATCAAGTAAGCTTCTTTGCCACATTTCTTCAATCCCT
CGTAGTGCCTCTTCTGCCAATCTTGTAAAGGATCAAACCCACCTACTACT
ACAATCGTTGCCGGAATGTTTACGCCGGAAATATCAACGGCATTCGGCCC
AAAAGCATTCGTCGCCGGATGGTTCCGATTAGACCCTTCTGGCAAAAAAG
CTTTCCACATCCAGTCAGTACGCTCCATTGAGACCAATGGAGCTCCAACG
AGCCTTGTTTCCGATTCAGTCCTCTCTTCTCCTCCGAAAAATGGCTGAAT
CGCTATAACTCCAATGAGCTTCAGCTTGGAAAAGTTACACTCATTAGCTC
GCACTGCCACGTTATGCGCCAAGTTGCCGCCGGCACTATCTCCGGCGACA
AAACAACGCTTGAGATCAGCACAAGCTGGGAAGTCCTCGATCTTTGAGAT
TTCATTGTCGATGAATTTTAACACATCAATCCCATCTTCATATTGACACG
GGTACCGATGCTCCGGAGCTAGACGGTAGTTGACAGAGATGACGACCGCG
GGGATTTCCCCGGCGAGCCTTCGACAGTAATCATCGAAGCCTTTTGAATT
TG
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