FC923144

Overview
NameFC923144
Unique NameFC923144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:39..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ARATH (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.198e-103
Identity = 184/229 (80.35%), Postives = 205/229 (89.52%), Query Frame = 2
Query:   29 TMARSFLQVAAAEE-VAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLERIWNF 712
            TMARSFLQ  + +E VAPPLRVVQIEGL +LKIIKHCKEFSP LVTGQLLGLDVGSVLEVTNCFPFP++++DEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST+LG +QT ELIETF+NYQENI+RCVCIIYDPS+++ G LA KALKLSDSFM+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYD    S++PFLE    F
Sbjct:    3 TMARSFLQAISKDEAVAPPLRVVQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEF 231          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DICDI (Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum GN=eif3h PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 105/208 (50.48%), Postives = 151/208 (72.60%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLERI 703
            L VVQI+GLV+LKIIK CKE+ P LV GQLLGLD+G+ LEV+NCFPFP +++++E     A+YQLEMMR LREVN+D+NTVGWY  T L  F    +IET  NYQ  I ++CV I+YDP +++QG L+ K  +L+ SFM+L++  +F+ E+L + NLS+ DIFE+IP+K+ NS LI+A + E +  +      +D   +S++ +LE++
Sbjct:   16 LDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCFPFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDIFEQIPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKV 223          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_NEMVE (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.149e-44
Identity = 91/206 (44.17%), Postives = 136/206 (66.02%), Query Frame = 2
Query:   89 VVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            +VQ++GL +LKIIKHC+E   S  LV G LLGL   + LE+TNCFPFP  +  ++ + D  NYQ+E+MR LR VN+D+  VGWYQST LG +    L+++  +YQ++I   V +IYDP R++QG L  KA +LSD  M LY+   F+ +KL +  +S+  +F+EIP+ + NS+L++  + EL+ +TP    D     LS+  +LE+
Sbjct:   17 IVQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEESVVLIYDPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMNVLLCELDENTPTPSAD-QFLTLSTGSYLEK 221          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_EMENI (Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans GN=AN1270 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.806e-44
Identity = 96/231 (41.56%), Postives = 137/231 (59.31%), Query Frame = 2
Query:   62 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPFLER 700
            AE+   PL  V++E LV++KIIKHC +  P   TG ++G+DV  VLE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++DPSRS QG+L+ +A +LS  FM  ++ N FT ++L++ NL + DI  E+PV++ NS LI++F+ +L+  T  T  +       L SSPF ++
Sbjct:    2 AEKEVTPLTAVKVEALVVMKIIKHCSQVFPTTATGSIVGMDVDGVLEITNTFPFPVVEVPPESHFDNAAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDPSRSAQGSLSLRAFRLSPKFMAAFKDNKFTSDELQKSNLKYQDILVELPVEIHNSHLITSFIHQLQNQTQATPAEIPTSLATLESSPFAKQ 232          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_XENLA (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43
Identity = 91/208 (43.75%), Postives = 141/208 (67.79%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP +++QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++   LSSS  LE+
Sbjct:   18 VKQVQIDGLVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTSQGSLSLKAYRLTPKLMEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLNLSSSNHLEK 223          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPCL (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus GN=ACLA_025520 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.393e-43
Identity = 94/227 (41.41%), Postives = 135/227 (59.47%), Query Frame = 2
Query:   68 EVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPFL 694
            E   PL  V++E LV++KIIKHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   + A                YQ EM+R LREVNVD N VGWY S  +G F    ++E    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++ NL + DIF E+PV++ NS LI++F+ +L+     T  +  P   AL S PF+
Sbjct:    3 EKETPLTAVKVEALVVMKIIKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVLEVPSESHFENAPTNPAAAAPRAKGNAAYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVVENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSNLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPTPTELPPSLAALESGPFV 229          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_XENTR (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 90/208 (43.27%), Postives = 139/208 (66.83%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            ++ VQI+G+V+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++   LSSS  LE+
Sbjct:   19 VKQVQIDGMVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTGQGSLSLKAYRLTPKLMEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLNLSSSNHLEK 224          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFU (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus GN=AFUA_1G09970 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 94/224 (41.96%), Postives = 136/224 (60.71%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTPV-TQRDYDPPALSSSPFLE 697
            PL  V++E LV++KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P  T+      AL S PF++
Sbjct:    7 PLTAVKVEALVVMKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVK 230          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPFC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_009410 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 94/224 (41.96%), Postives = 136/224 (60.71%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTPV-TQRDYDPPALSSSPFLE 697
            PL  V++E LV++KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P  T+      AL S PF++
Sbjct:    7 PLTAVKVEALVVMKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSLAALESGPFVK 230          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_TAEGU (Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.954e-41
Identity = 93/217 (42.86%), Postives = 142/217 (65.44%), Query Frame = 2
Query:   50 QVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            + AAA + A  ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++  +L+SS  L
Sbjct:   23 KAAAAGDSA--VKQVQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHL 235          
The following BLAST results are available for this feature:
BLAST of FC923144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_ARATH1.198e-10380.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DICDI7.872e-5550.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEMVE2.149e-4444.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_EMENI2.806e-4441.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENLA1.066e-4343.75Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPCL1.393e-4341.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENTR6.912e-4343.27Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFU6.912e-4341.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPFC6.912e-4341.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_TAEGU4.954e-4142.86Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701E10EF StrClemenN Citrus clementina cDNA clone C31701E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923144 ID=FC923144; Name=FC923144; organism=Citrus clementina; type=EST; length=735bp
GAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCTAGGTCTTTTCTAC
AAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAGAGTTGTTCAGATT
GAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCAAGGAGTTTTCACC
AGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTTGGTAGCGTGCTTG
AAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGACGAAGAAATT
GAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGTCTAAGAGA
GGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCAACAATGCTAG
GATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAACTACCAGGAG
AATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAAGGTCCAATCA
AGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCCTTTATGGATC
TTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGAGAAAAATTTA
TCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCTCAAATTCTGC
ACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACTCCAGTCACAC
AGCGTGATTACGACCCGCCTGCATTGTCAAGCAGTCCATTCTTGGAGAGA
ATATGGAATTTTTGATTGATGCATGGATGATTGTC
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