FC923193

Overview
NameFC923193
Unique NameFC923193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923193_ssr226 microsatellite FC923193_ssr226:226..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14406 contig Ccv1_Contig14406:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.528e-58
Identity = 123/202 (60.89%), Postives = 147/202 (72.77%), Query Frame = 3
Query:  138 MADNSGTGGNG----VCVTFKDCEDAIQNCXXXXXXXXXXXCDTKDSVY-FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            MA+ SG GG+     V V  K+ ++  Q                +DS+   SVPF+QKLMAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+VTIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F GTLP+GSN+Q+FV+EFIITFYLMFVISGVAT
Sbjct:    1 MAEISGNGGDARDGAVVVNLKEEDEQQQQ-----QQAIHKPLKKQDSLLSISVPFLQKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVAT 197          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.536e-56
Identity = 119/202 (58.91%), Postives = 142/202 (70.30%), Query Frame = 3
Query:  138 MADNSGTG-GNG----VCVTFKDCEDAIQNCXXXXXXXXXXXCDTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            MAD SG G GN     V V  KD  +  Q              D+  SV  SVPF+QKL+AE LGTYF++F GCASVVVN+ N+ +V+LPGI+IVWGL +MVL+YSLGHISGAH NP+VTIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F G+ P GS++QAF MEFI+TFYLMF+ISGVAT
Sbjct:    1 MADISGNGYGNAREEVVMVNLKDEVEHQQEMEDIHNPRPLKKQDSLLSV--SVPFLQKLIAEFLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVAT 200          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.588e-55
Identity = 97/145 (66.90%), Postives = 124/145 (85.52%), Query Frame = 3
Query:  273 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            FSVPF+QK++AEI GTYF+IFAGC +V +N +    ++ PG++IVWGL VMV+VY++GHISGAHFNP+VT+A ATC+RFPW+QVP Y   Q+LG+TLAAGTLRL+F  + + F GTLPAGS++Q+ V+EFIITFYLMFVISGVAT
Sbjct:   42 FSVPFIQKIIAEIFGTYFLIFAGCGAVTINQSKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPGTLPAGSDVQSLVLEFIITFYLMFVISGVAT 186          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.713e-52
Identity = 99/153 (64.71%), Postives = 124/153 (81.05%), Query Frame = 3
Query:  276 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATITEL*ASFA 734
            SVPF+QKL+AE +GTYF+IFAGCAS+VVN N   +++ PGI+IVWGLV+ VLVY++GHISG HFNP+VTIA A+ +RFP  QVP Y++ Q+LGS LA+GTLRLLF    DQF+GT+P G+N+QAFV EFI+TF+LMFVI GVAT       FA
Sbjct:   33 SVPFLQKLVAEAVGTYFLIFAGCASLVVNENYYNMITFPGIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNRAVGEFA 185          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.028e-51
Identity = 90/144 (62.50%), Postives = 119/144 (82.64%), Query Frame = 3
Query:  276 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            SVPF+QK++AEI GTYF++FAGC +V +N +    ++ PG++IVWGL VMV+VY++GHISGAHFNP+VT+A AT  RFPW+Q+P Y+L Q+LG+TLA+GTLRL+F  + + F GTLP GS +Q+ V+E I TFYLMFVISGVAT
Sbjct:   39 SVPFIQKIIAEIFGTYFLMFAGCGAVTINASKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVAT 182          

HSP 2 Score: 21.557 bits (44), Expect = 5.028e-51
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  707 DNRAIGELCSL 739
            DNRAIGEL  L
Sbjct:  183 DNRAIGELAGL 193          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.907e-48
Identity = 92/145 (63.45%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  273 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            FSV F QK++AEILGT+F+IFAGCA+V VN      V+ PGI I WGL VMV+VYS+GHISGAH NP+VT+A ATC RFPW++VP Y   QV GS  A+  LR LF    + F GT PAGS++Q+  MEFIITFYLMFV+SGVAT
Sbjct:   48 FSVQFAQKVIAEILGTFFLIFAGCAAVAVNKRTGGTVTFPGICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVAT 192          

HSP 2 Score: 21.557 bits (44), Expect = 2.907e-48
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  707 DNRAIGELCSL 739
            DNRAIGEL  L
Sbjct:  193 DNRAIGELAGL 203          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.300e-45
Identity = 95/163 (58.28%), Postives = 116/163 (71.17%), Query Frame = 3
Query:  276 SVPFMQK-------------LMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            SV FMQK             ++AEILGTYFMIFAGC +VVVN +    V+ PGI  VWGLVVMVLVY++ HISGAHFNP+VT+A ATC RF WKQVP Y++ QVLGST+A+ TLR++F         +  F GT PAGS  QA  +EF+I+F+LMFV+SGVAT
Sbjct:   46 SVQFMQKVHPWCMCMNKNLLILAEILGTYFMIFAGCGAVVVNQSTGGAVTFPGICAVWGLVVMVLVYTVSHISGAHFNPAVTVAFATCGRFRWKQVPSYVVAQVLGSTMASLTLRVVFGGGGGGARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVAT 208          

HSP 2 Score: 21.557 bits (44), Expect = 6.300e-45
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  707 DNRAIGELCSL 739
            DNRAIGEL  L
Sbjct:  209 DNRAIGELAGL 219          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 93/160 (58.13%), Postives = 117/160 (73.12%), Query Frame = 3
Query:  276 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATITEL*ASFA 734
            SV F+QKL+ E +GT+ MIFAGC+++VVN    K V+LPGI++VWGLVV V++YS+GH+SGAHFNP+V+IA A+ K+FP+ QVP YI  Q+LGSTLAA  LRL+F         K D + GT P+ SN  +FVMEFI TF LMFVIS VAT      SFA
Sbjct:   38 SVSFVQKLIGEFVGTFTMIFAGCSAIVVNETYGKPVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATDKRATGSFA 197          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.083e-43
Identity = 88/151 (58.28%), Postives = 117/151 (77.48%), Query Frame = 3
Query:  276 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            SV F+QKL+AE++GTY++IFAGCA++ VN  +  +V+L GI++VWG+V+MVLVY LGH+S AHFNP+VT+A A+ +RFP  QVP YI  QV+GSTLA+ TLRLLF        +K D F G+ P+GS++QAFVMEFIIT +LM V+  V T
Sbjct:   43 SVHFLQKLLAELVGTYYLIFAGCAAIAVNAQHNHVVTLVGIAVVWGIVIMVLVYCLGHLS-AHFNPAVTLALASSQRFPLNQVPAYITVQVIGSTLASATLRLLFDLNNDVCSKKHDVFLGSSPSGSDLQAFVMEFIITGFLMLVVCAVTT 192          
BLAST of FC923193 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 87/146 (59.59%), Postives = 109/146 (74.66%), Query Frame = 3
Query:  279 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVAT 707
            V  +QKL+AE +GTYF+IFAGC SV VN    KI   V+ PGI + WGL+VMV+VY++G+ISGAHFNP+VTI  +   RFPWKQVP YI+ Q++GS LA+GTL LLF      + GT+P GSN Q+  +E II+F LMFVISGVAT
Sbjct:   39 VVILQKLIAEAIGTYFVIFAGCGSVAVN----KIYGSVTFPGICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVAT 180          
The following BLAST results are available for this feature:
BLAST of FC923193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
NIP12_ARATH4.528e-5860.89Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
NIP11_ARATH5.536e-5658.91Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP11_ORYSJ3.588e-5566.90Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NO26_SOYBN3.713e-5264.71Nodulin-26 OS=Glycine max PE=1 SV=2[more]
NIP11_MAIZE5.028e-5162.50Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP13_ORYSJ2.907e-4863.45Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP12_ORYSJ6.300e-4558.28Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP31_ARATH1.671e-4458.13Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP21_ARATH1.083e-4358.28Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]
NIP1_NICAL5.942e-4259.59Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31702A12EF StrClemenN Citrus clementina cDNA clone C31702A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923193 ID=FC923193; Name=FC923193; organism=Citrus clementina; type=EST; length=741bp
GAAATTGCATGTGATTTCAGAAGGACACCAAATAAAACTCACTCCACCTC
CCGGCCCCAAGTAAAGAGAAATCACTGTGCCTTTGTCTGTCCACTTTGCT
CTCCGATCACTGTGCCTTGATCCTATATAGATAGATCATGGCCGATAATT
CAGGGACAGGGGGCAATGGAGTTTGTGTAACATTCAAAGATTGTGAAGAT
GCCATTCAGAATTGCCCTTCCTCTGCTCCTCCTCCTCCTCCTCCTTCATG
CGACACAAAGGACTCCGTATATTTTTCAGTACCCTTCATGCAAAAGTTGA
TGGCGGAGATTTTGGGGACATATTTTATGATATTCGCGGGATGTGCATCG
GTGGTGGTGAATCTGAACAATGAAAAGATAGTGTCGCTTCCAGGAATATC
AATTGTGTGGGGACTTGTTGTGATGGTGCTTGTTTACTCCCTCGGTCACA
TCTCCGGCGCCCATTTCAATCCTTCTGTCACCATTGCTCATGCCACCTGC
AAACGTTTTCCCTGGAAACAGGTTCCGCCTTATATACTATGCCAAGTTCT
GGGATCAACGTTGGCTGCGGGAACACTTCGGTTACTGTTTCAAGAAAAAC
AGGATCAGTTCGCAGGAACACTTCCAGCTGGCTCCAATATTCAGGCGTTT
GTGATGGAGTTCATTATCACCTTCTACCTCATGTTTGTCATATCCGGTGT
CGCCACGATAACAGAGCTATAGGCGAGCTTTGCAGTCTCGC
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