FC923195

Overview
NameFC923195
Unique NameFC923195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923195_ssr417 microsatellite FC923195_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923195_ssr716 microsatellite FC923195_ssr716:716..727. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14287 contig Ccv1_Contig14287:4..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 58/217 (26.73%), Postives = 91/217 (41.94%), Query Frame = 1
Query:   61 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVLWRGST*ATCS 711
            ++FFLS  + K       LS+    + +  +      S S     V  + S+    K+Y       +   L  A            MR+ + A    + P LC+AACEL GG                  S +H++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A++    G +S RI+RV+ E+ + +GS+ L  G     CS
Sbjct:   15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDVCS 224          
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 49/154 (31.82%), Postives = 70/154 (45.45%), Query Frame = 1
Query:  229 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVLWRG 690
            KSY       I   L  A            MR+ + A    + PALC+AACELVGG+                 S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A S      +S RI+R + E+ +A+G++ L  G
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAG 230          
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  319 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVLWRG 690
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E LAS+ +    +  R++R + E+ +A+G++ L  G
Sbjct:  107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAG 229          
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 52/196 (26.53%), Postives = 85/196 (43.37%), Query Frame = 1
Query:  142 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVLWRG 690
            + P+ N  RP   + P+ V+   +T             P   K Y T     +   L +A            MR+ + A    + P LC+AACELVGG++E               S IH++LP  D   L  + KPT +  +  +  +L  D++L F  E + +S   AG    RI+  + E+ +++G++ L  G
Sbjct:   40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAG 229          
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  319 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVLWRG 690
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  +  +  +L  DA+L F  E LAS+ + +  +  R++R + E+ +A+G++ L  G
Sbjct:  103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAG 224          
BLAST of FC923195 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 48/180 (26.67%), Postives = 76/180 (42.22%), Query Frame = 1
Query:  148 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 672
            P + H+ P       + + + S P       ++YWT++  +I   L +A            MR+ V A     AP  +CVAACEL GG R                S IH++LP  D    + + KP+ +  +     +L  DA+ P   + + S   P       ILR++ E+ R +GS
Sbjct:   17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGS 195          
The following BLAST results are available for this feature:
BLAST of FC923195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GGPPS_CATRO4.740e-1326.73Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR6.844e-1231.82Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH8.939e-1233.06Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN1.991e-1126.53Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL7.567e-1132.26Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGR_ARATH9.883e-1126.67Geranylgeranyl pyrophosphate synthase-related prot... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31702B02EF StrClemenN Citrus clementina cDNA clone C31702B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923195 ID=FC923195; Name=FC923195; organism=Citrus clementina; type=EST; length=765bp
GACTCATAATTTTTCTCCACCCAATCCTTTCTCTCCTTCACTCACCTTTC
TTCGTATATAGTTAATTTCTTCCTTTCTATTTGTCTTTTGAAGTCTGCAC
CAATGGCTAAAGCCCTCTCTGTTTTAAACCTACCGGCTCATGTTGCCCCT
AGGCGAAATCACAGCCGTCCATCATTGTCCTACAGACCTATGATGGTCAC
CATGGCCATGTCCACACCCAACAAGAATAAATCATATTGGACGTCTGTAC
ATGAGGATATTGGGGCCCACCTCCGGCAGGCCGTCGTCGTAAAGGAGCCG
GTAGAAGTTTACGAGCCCATGCGCCATTTTGTCTTCGCCGCCCCAGTCAA
CATGGCGCCCGCGCTGTGTGTGGCAGCCTGTGAGCTCGTCGGGGGCCACC
GCGAACAAGCCATTGTTGCTGCTGCTGCTTTGCACGTCATGCATGCAGCT
TCTTTCATTCATGAAAATCTTCCACTATCAGATAGGACTAGTCTTATCCC
CAAATCCAAGCCCACGATGTATCACGCTTTCAAACCAAATACGGAGCTTC
TCGTGGCTGATGCAATGCTTCCGTTTGGGCTGGAGTTGTTGGCCAGCTCC
GACAACCCGGCCGGAAACAACTCGGGTCGGATTTTACGTGTGATGGTTGA
GATGACACGCGCCATGGGATCACAGGTGTTGTGGAGGGGCAGTACATGAG
CTACATGTAGTCATGTGATGATGATGATCGAAAATTGATGGTATACAGAT
GTGGAATGACTATGA
back to top