FC923198

Overview
NameFC923198
Unique NameFC923198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7993 contig Ccv1_Contig7993:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923198 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.483e-62
Identity = 122/198 (61.62%), Postives = 141/198 (71.21%), Query Frame = 3
Query:  102 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAASGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKN---DKLXXXXXXXT--CSICCLVKNRELNPVGMIPGG 680
            PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRV          RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   IS F D S++EM  IGK+   D         T  C ICCL KNRE  PV ++PGG
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGG 206          
BLAST of FC923198 vs. ExPASy Swiss-Prot
Match: RPIB_ECOLI (Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 3
Query:  108 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAASGMSTSKESAVEILDTWLKTPFK 488
            KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V           G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A  I+D WL   ++
Sbjct:    3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG----GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYE 130          
The following BLAST results are available for this feature:
BLAST of FC923198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DR102_ARATH4.483e-6261.62DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
RPIB_ECOLI1.617e-1134.85Ribose-5-phosphate isomerase B OS=Escherichia coli... [more]
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Properties
Property NameValue
Genbank descriptionC31702B05EF StrClemenN Citrus clementina cDNA clone C31702B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923198 ID=FC923198; Name=FC923198; organism=Citrus clementina; type=EST; length=684bp
AAAAAGTAGACTCAGTAACTGACTCTCCACTGAGCTTATCCCTCAGAATA
GTCAACTCATAGTCAACCATGGCTGAAAACGCTGCCGCCGCTGCTCCTCA
CCCTCTCAAGATCATCGCCGGCGCCGACTCCTTTGGTGCTGAATTGAAAG
ACGCTTTGGTCTCCCACCTTCGGTCACTCAACATAGACGTGGAAGATCTC
GGCACCTCCGATTACTACTCCATCGGCGCCGAGGTCGGCCGCCGCGTCTC
CTCCTCCGATTCGTCCGACACCACCACACGCGGCCTCGTCGCCTGCGGAA
CTGGAGTCGGCGTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCC
ACCACATGTCTCACTCCCGCCGACGCCCTCAACACCCGCTCCATCAACAA
CTGCAACGTCCTCGCCGCCTCAGGTATGTCCACTTCCAAAGAATCCGCCG
TCGAAATCCTGGACACGTGGCTTAAAACCCCTTTTAAAGCCCCATGCCCC
GCGTCGGGTTTTAAGCCATGGGAAGAGAACATATCGTGTTTTTTCGACAA
ATCGATGACCGAAATGCCCCTTATTGGTAAAAATGATAAATTAGATAGTG
ATTCTAGTAGCAGTACTTGTAGCATATGTTGTTTAGTTAAGAACAGGGAA
TTGAATCCTGTGGGAATGATTCCCGGTGGGGTCA
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