FC923201

Overview
NameFC923201
Unique NameFC923201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13654 contig Ccv1_Contig13654:836..1603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.527e-56
Identity = 106/230 (46.09%), Postives = 151/230 (65.65%), Query Frame = 3
Query:   81 DRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAEELTTHQSKLQVPVIDLDGIRYNQL--EDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            DR+  ++AFD+TK GVK L+DAG+  IP IF  PPA L        S   +P IDL G   + +    +V+++  A++ WGFFQVINHG+P++++++MI+G+ +F+EQD EVKK FY+R+    + ++SNFDL+ S  A+WRDTL   T+      P + P  C + ++EY KEV KLG+ LFE+LS ALGL   + +DM C N   ++ HYYP CPQ +LTLG   HSD
Sbjct:   12 DRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPP-RPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSD 240          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.538e-55
Identity = 112/235 (47.66%), Postives = 158/235 (67.23%), Query Frame = 3
Query:   78 YDRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAEELTTHQSKLQVPVIDLDGIRYNQLE--DIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSR--TASWRDTL-AISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXED-MGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            YD+  E++AFDDTKAGVK LVD+G+  +P+IF+ PP + A++  TH      PVIDL GI  + ++  +IVD+VR AS+ WGFFQV+NHG+P +++   ++G  +F EQD EVKKQ+YTR+  + V + SN DLY S    ASWRDT+         SL+  E+P  C ++++++ K+V KLG TL E+LS  LGL   Y +D M CF+L+   C+YYP CPQ ELT+G   H+D
Sbjct:   10 YDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKDRAKKCETH---FVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPSLQ--EFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLF-CSCNYYPPCPQPELTMGTIQHTD 238          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.484e-54
Identity = 106/235 (45.11%), Postives = 152/235 (64.68%), Query Frame = 3
Query:   78 YDRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAEELTTHQSKLQ---VPVIDLDGIRYNQL---EDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            +DRA E++AFD+TK GVK LVD+GV  +PRIF  P  +L+         L    +P IDL G  +       + +++++ A+  WGFFQVINHGV L L+++M +GV  F+EQ  EV+K+FY+R+ +R   + SNFDL+ S  A+WRDT +  T    + +P + P++CRD +MEY K+V  LG+ LFE+LS ALGL+P +  DM C     ++ HYYP CP+ +LTLG   HSD
Sbjct:   10 FDRASELKAFDETKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFS-CTMAPDTPKPQDLPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSD 243          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.228e-54
Identity = 104/231 (45.02%), Postives = 153/231 (66.23%), Query Frame = 3
Query:   78 YDRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAEELTTHQSKLQVPVIDLDGIRYNQL--EDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            YDRA E++AFD+ K GVK LVDAGV  +PRIF  P   +A    T  + + +P IDL G+  + +  E +V +V+ A + +GFFQ INHGVPL+++++MI G+ +F++QD EV+K FYTR++T+ ++++SN DLY S  ASWRDTL+         +  + P+VC + ++EY KEV KL E +FEILS ALGL P + ++M C     ++CH +P CP+   T G   H+D
Sbjct:    5 YDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNVANPKPT-STVVMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLS-CVMAPDVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTD 233          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 102/234 (43.59%), Postives = 156/234 (66.67%), Query Frame = 3
Query:   75 EYDRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAE-ELTTHQSKLQVPVIDLDGIRYNQ--LEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRER-TRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            E +  +E++AFD+TKAGVK +VD G+  IPRIFI  P  L    +   +S +++PVI+L+G+  N     +IV+++  AS+ +GFFQ++NHG+P +++ +M++GV KF+EQD ++K+Q+Y+R+R  +N  ++SN+ L      +WRDT+    +  +  +P E+P VCRD +M+Y   V  LG  LFE+LS ALGLKP + E+M C     ++ HYYP CPQ ELT G   HSD
Sbjct:   38 EEESLRELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRISVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQP-DPQEFPDVCRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSD 270          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.044e-52
Identity = 106/235 (45.11%), Postives = 146/235 (62.13%), Query Frame = 3
Query:   78 YDRAKEVQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAEELTTHQSKLQ---VPVIDLDGIRYNQL---EDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            +DRA E++AFD+TK GVK LVD+G+  IPRIF     ELA         L    +P IDL G  +      ++ ++ ++ A+  WGFFQVINHGV L L+++M +GV  F+EQ  EV+K  Y+R+  R   + SNFDLY +  A+WRDT     +     EP + P++CRD +MEY K+V  LGE LFE+LS ALGL P + +DM C     ++CHY+P CP+ +LT G   HSD
Sbjct:   10 FDRASELKAFDETKTGVKGLVDSGISKIPRIFHHSSVELANPKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAPDPP-EPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSD 243          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 69/228 (30.26%), Postives = 115/228 (50.44%), Query Frame = 3
Query:  126 VKELVDAGVVNIPRIFIRPPAELAE--ELTTHQSKL---QVPVIDLDGIRYNQ---LEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVR-FNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTI---MEYIKEVSKLGETLFEILSMALGLKPEYXE-DMGCFN--LYSVICHYYPHCPQXELTLGARTHSD 764
            V+ L  +G+++IP+ +IRP  EL    ++   + K    QVP IDL  I  +     E+ +++++ AS  WG   +INHG+P +L++ + +   +F    VE K+++   + T  ++ + S      S    W D         +  + + WPK   D I    EY K +  L   +F+ LS+ LGL+P+  E ++G     L  +  +YYP CPQ EL LG   H+D
Sbjct:    7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTD 234          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.391e-18
Identity = 57/220 (25.91%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  126 VKELV-DAGVVNIPRIFIRPPAELAEELTTHQSKLQVPVIDLDGI-RYNQLEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKV---CRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDM--GCFNLYSVICHYYPHCPQXELTLGARTHSD 764
            V+E+V +  +  +P  ++R   +  E       K+++P+ID+  +     ++  V+++  A + WGFFQ++NHG+  + + ++   +  F    +E KK+F+ R       F   F +   +   W D    +    +  +P+ +PK+    RDT+  Y  EV  + + L   ++ AL +KPE  E +     ++ S+  +YYP CPQ +  +G   HSD
Sbjct:   17 VQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRP-DEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSD 235          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.066e-17
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 3
Query:   96 VQAFDDTKAGVKELVDAGVVNIPRIFIRPPAELAE-----ELTTHQSKLQVPVIDLDGI--RYNQLEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTAS-------WRDTLAISTSGTKSLEPNEWPKVCRD---TIMEYIKEVSKLGETLFEILSMALGLKPEYXE-DMGCFN--LYSVICHYYPHCPQXELTLGARTHSD 764
            V A   T + V+ L  +G+  IP+ ++RP  EL       E        QVP IDL  I     ++ +   Q++ A+  WG   ++NHG+   LI  +      F +Q VE K      E+  N + N N   Y S+ A+       W D            + + WPK   D      EY K++  L   +  +LS+ LGL+    E ++G     L  +  +YYP CPQ EL LG   H+D
Sbjct:    2 VNAVVTTPSRVESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEK------EKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTD 238          
BLAST of FC923201 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.066e-17
Identity = 57/184 (30.98%), Postives = 89/184 (48.37%), Query Frame = 3
Query:  228 QVPVIDLDGIRYNQLEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEW---PKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYXEDMGCFNL-YSVICHYYPHCPQXELTLGARTHSDP 767
            ++PVI L GI   +  +I D++  A + WG FQV++HGV   L+ +M      F     + K +F      +   F  +  L       WR+ +   +   K+ + + W   P   R    EY K +  L   L E+LS A+GL+ E      C ++   V+ +YYP CPQ +LTLG + H+DP
Sbjct:   37 EIPVISLAGIDGCRRAEICDEIVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRF-DMTGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLSEAMGLEKEAL-TKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDP 218          
The following BLAST results are available for this feature:
BLAST of FC923201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
ACCH1_ARATH4.527e-5646.091-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC6.538e-5547.661-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH2.484e-5445.111-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH7.228e-5445.02Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
DV4H_CATRO7.992e-5343.59Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH2_ARATH1.044e-5245.111-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_ARATH3.621e-2130.26Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
SRG1_ARATH6.391e-1825.91Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
LDOX_PETHY7.066e-1729.22Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
FL3H_CALCH7.066e-1730.98Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]

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Properties
Property NameValue
Genbank descriptionC31702B08EF StrClemenN Citrus clementina cDNA clone C31702B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923201 ID=FC923201; Name=FC923201; organism=Citrus clementina; type=EST; length=767bp
GGTCATCTTCTTGTAGAAGACAGACAATGGATATCTCAGATGCGGCCAGT
ACAACGACAACGAAAACTGTAACGGAATATGACAGAGCTAAAGAGGTTCA
GGCTTTTGATGATACGAAAGCCGGTGTCAAAGAACTAGTGGACGCTGGAG
TAGTGAATATTCCCAGGATATTCATTCGACCGCCTGCAGAGCTTGCGGAG
GAGTTGACGACTCACCAGAGCAAATTACAAGTGCCAGTTATCGATCTTGA
TGGCATCAGATACAATCAACTTGAAGATATTGTTGATCAAGTTCGGGCTG
CGTCCCAAACATGGGGCTTTTTCCAAGTTATCAATCATGGGGTTCCCTTA
AACCTGATACAAGAGATGATCGAAGGAGTTCACAAGTTTAATGAACAAGA
TGTTGAGGTGAAGAAACAGTTCTACACACGTGAGCGCACAAGAAATGTTA
GATTCAACAGTAACTTTGATCTGTATCACTCACGAACCGCAAGTTGGAGG
GACACGTTGGCCATTTCTACTTCGGGTACCAAAAGTTTGGAACCCAATGA
ATGGCCGAAAGTTTGCAGAGATACCATAATGGAGTACATAAAGGAAGTCT
CAAAATTGGGTGAGACTCTGTTTGAAATACTATCAATGGCTCTAGGACTG
AAGCCTGAATATTTNGAAGATATGGGATGCTTCAATTTATACAGCGTTAT
CTGCCACTACTATCCGCACTGCCCACAGNCAGAGCTGACTTTGGGAGCTA
GAACGCATTCTGATCCT
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