FC923203

Overview
NameFC923203
Unique NameFC923203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14410 contig Ccv1_Contig14410:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.508e-77
Identity = 142/205 (69.27%), Postives = 166/205 (80.98%), Query Frame = 3
Query:  126 MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMALRDSI-NGT*AAHSYVMEYSP 728
            ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPGVR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCNGGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVW  +ASDHQAVM LRDSI       H+YVMEY P
Sbjct:    1 MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPGVRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKP 203          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.198e-44
Identity = 86/186 (46.24%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  138 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMALRDSI 683
            D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+W   ASD      +RD++
Sbjct:   15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTL 200          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.091e-43
Identity = 85/186 (45.70%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  138 DKKESDINNTQTVADSVDNNNKDAE---ERQARELKANLHPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMALRDSI 683
            D  +++ N+TQ   +    +   ++   +R+A       HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+W   ASD      +RD++
Sbjct:   15 DHDQNEENSTQKDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTL 200          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 60/146 (41.10%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  246 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMALRDSI 683
            H L+  + F Y  R  G      Y   ++ +    +VE FW    H  RP+ +    D+H FK G++P+WED ANC GGKWIIR KK +S R WE+L++A++G+Q   GD +CGAV SIR  EDI+S+W  +A D      +R+++
Sbjct:   31 HQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETL 176          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 58/143 (40.56%), Postives = 89/143 (62.24%), Query Frame = 3
Query:  246 HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            HPL++ + FW+    P V++ QTS+  +++ +  FSTVE FW  Y ++  PS L    D + FK  I P WED    NGGKW + F K  S + W   +LAL+G+Q D+GD ICGAV++IR  ++ +S+W  +AS+  A +++
Sbjct:   60 HPLEHSWTFWFDN--PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSI 200          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  174 VADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            +AD  D ++  A  R         HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q D+GD ICGAV+S+R  ++ +++W  +A++  A +++
Sbjct:   22 IADDGDGSSAAAAGR------ITAHPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISI 180          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.286e-25
Identity = 63/188 (33.51%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  141 KKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII---RFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVM----ALRDSI 683
            K + D   T   A +       A +   R      HPL N +  WY           S+ED   +I  F TVE FW  Y H+  PS +   +D  LFK+ IRP+WED+AN  GG+W+I   +  K      W D++L L+G+  D+ D ICGAV++IR   + +S+W    ++ +A +     LRD++
Sbjct:   46 KPKEDPQETGEPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLEND----RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDAL 229          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.286e-25
Identity = 60/169 (35.50%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  204 DAEERQARELK-------------ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            DA+ER+  E+              A  HPL++ + FW+     G   Q ++  +I+ I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW     +  S   W   +LA++G+Q DYGD ICGAV+S+R  ++ +++W  +A++  A +++
Sbjct:   25 DADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDN-PQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISI 192          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.286e-25
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  246 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQAVMAL 671
            HPL++ + FW+       + Q ++  +I+ I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q DYGD ICGAV+S+R  ++ +++W  +A++  A +++
Sbjct:   43 HPLEHSWTFWFDNPQSKSK-QAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSI 183          
BLAST of FC923203 vs. ExPASy Swiss-Prot
Match: IF4E_DICDI (Eukaryotic translation initiation factor 4E OS=Dictyostelium discoideum GN=eif4e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.985e-25
Identity = 67/187 (35.83%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  132 ITDKKESDINNTQTV-ADSVDNNNKDA-------EERQARELKANL--HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFK-KVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWKPHASDHQA 659
            +T +  +  NNTQ    ++ DN NK+        EE+Q  E   NL  HPL+N++  WY  ++  +  +  + D++KK++ F +VE FW  + +L   S L   +  HLFK+ I P WE  +N  GGKW +  K K      W   V+A VG+  D  D ICG V + R N D +SVW   A D +A
Sbjct:   26 VTSETTTTTNNTQNKETETTDNINKEETADKENKEEQQQEENPENLIKHPLQNRWSLWYDYQSGKINPE-HWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKA 211          
The following BLAST results are available for this feature:
BLAST of FC923203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E3_ARATH1.508e-7769.27Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_HUMAN2.198e-4446.24Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_MOUSE1.091e-4345.70Eukaryotic translation initiation factor 4E type 2... [more]
IF4E4_CAEEL8.110e-3141.10Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E1_ARATH4.165e-2740.56Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E1_WHEAT6.015e-2636.75Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E_DROME2.286e-2533.51Eukaryotic translation initiation factor 4E OS=Dro... [more]
IF4E1_ORYSJ2.286e-2535.50Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_MAIZE2.286e-2538.73Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E_DICDI2.985e-2535.83Eukaryotic translation initiation factor 4E OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionC31702B10EF StrClemenN Citrus clementina cDNA clone C31702B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923203 ID=FC923203; Name=FC923203; organism=Citrus clementina; type=EST; length=743bp
GAGCACACGAATTTCAATAATCCCTCCTCTGTTCACTCTTCGCTTCCTTG
TTTGGTTAAAAGTGAGAAAATTAGGGCTAGAGGTGAAGAAGAACAAAATT
TTAAAAAGAAAAAGAAAATCAATAAATGGAAATAACAGATAAGAAGGAAT
CCGATATCAATAACACACAAACAGTCGCCGATTCCGTCGATAACAATAAC
AAAGACGCCGAAGAACGCCAAGCTCGTGAACTTAAAGCCAATTTGCATCC
TCTTAAGAACAAGTTTGTCTTTTGGTACACTCGTCGAACACCTGGAGTTC
GAACTCAAACATCCTATGAGGACAACATAAAGAAAATTGTGGACTTCAGT
ACTGTTGAAGGCTTTTGGGTCTGCTATTGCCACTTGGCTCGTCCTTCTTT
GTTACCAAGCCCTACAGATTTGCATCTTTTCAAGGAAGGAATTCGCCCAT
TATGGGAGGACTCTGCAAATTGCAATGGCGGTAAATGGATAATAAGGTTC
AAGAAAGTTGTATCAGGTCGCTTTTGGGAAGATCTGGTTCTTGCCTTGGT
GGGTGACCAGCTTGACTATGGTGATAACATATGTGGTGCAGTCCTAAGCA
TTCGATTCAATGAAGATATATTGAGTGTGTGGAAACCGCATGCATCTGAT
CATCAGGCTGTGATGGCTCTTAGAGATTCTATCAACGGCACTTAAGCTGC
CCACAGCTATGTTATGGAATACAGCCCATGATGCTCTCTGCGC
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