FC923204

Overview
NameFC923204
Unique NameFC923204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15207 contig Ccv1_Contig15207:43..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.323e-72
Identity = 142/195 (72.82%), Postives = 157/195 (80.51%), Query Frame = 2
Query:  131 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI 715
            MAGK LMHA+QYNSYGGGAA L+HV++PVPTP  +EV LKLEAT+LNPVDWKIQKG +RPFLPRKFPCIPATD            K FKAGDKVVA L++L   GG LAEFAVA E  TV RP EV AAE + LPVAGLTA QALT  AG+KLDG+G++ NILVTAASGGVGHYAVQLAKL N HVTA+CGARNI
Sbjct:    1 MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHL--GGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNI 192          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.841e-69
Identity = 135/195 (69.23%), Postives = 152/195 (77.95%), Query Frame = 2
Query:  131 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI 715
            MA K LMHA+QY+ YGGG   LKHVE+ VP P  DE+LLK+EA  LNP+DWKIQKG LRP LPRKFP IP TD              FK GDKVVA L++    GG LAE+AVAKE+ TVARP EVSAAEG+ LPVA LTAHQALTQ A +KLDGSG++KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARN+
Sbjct:    1 MAAK-LMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSH--ATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNL 192          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 63/198 (31.82%), Postives = 92/198 (46.46%), Query Frame = 2
Query:  149 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNG----G*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK--LGNTHVTASCGARNI 715
            M A  Y+ YGG         + VP   +D+VL+K+ A ALNPVD K ++G+ +       P +P  D            K  K GD+V A ++     G    G LAE+   +E     +P  +  A+ +GLP+A  TA + L +   SAG         K+ILV   +GGVG   +QLAK   G + V A+     +
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAG---------KSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKL 265          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK 670
            G+ LM A++ + +GG        ++ VP P + +VL+K++A  +NPVD  I+ G        + P  P  D              FK GD+V  F    V+ G   AE+A+A + +    P E+   +G+ + V   TA++AL  SA  K       +++LV  ASGGVG  A Q+A+
Sbjct:    4 GQRLMRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYS--RKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRV--FTTSTVSGG--YAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAG-----ESVLVHGASGGVGLAACQIAR 170          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 56/180 (31.11%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK 670
            G+ LM A++   +GG        ++ VP P   +VL+K++A  +NPVD  I+ G   ++P L    P  P  D              FK GD+V  F    ++ G   AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG  A Q+A+
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIKPLL----PYTPGFDVAGIIEAVGESVSAFKKGDRV--FTTRTISGG--YAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVK-----PGESVLVHGASGGVGIAACQIAR 170          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_HUMAN (Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG 703
            G+ LM AV+   +GG        ++ VP P   +VL+K+ A  +NPV+  I+ G    +P L    P  P +D              FK GD+V  F +  ++ G   AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG  A Q+A+     +  + G
Sbjct:    4 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL----PYTPGSDVAGVIEAVGDNASAFKKGDRV--FTSSTISGG--YAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAG-----ESVLVHGASGGVGLAACQIARAYGLKILGTAG 181          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_PONAB (Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 57/191 (29.84%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG 703
            G+ LM AV+   +GG        ++ VP P   + L+K+ A  +NPV+  I+ G    +P L    P  P +D              FK GD+V  F +  ++ G   AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG  A Q+A+     V  + G
Sbjct:    4 GQKLMRAVRVFEFGGPEVLKLQSDIAVPIPKDHQALIKVHACGVNPVETYIRSGTYSRKPLL----PYTPGSDVAGVIEAVGGNASAFKKGDRV--FTSSTISGG--YAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSAHVKAG-----ESVLVHGASGGVGLAACQIARAYGLKVLGTAG 181          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_RAT (Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 706
            G+ LM A++   +GG        ++ VP P   +VL+K+ A  +NPV+  I+ G    +P L    P  P +D              FK GD+V  F     T  G  AEFA++ +++T   P  +   +G+ L +   TA +AL  SA  +       +++LV  ASGGVG    Q+A+     V  + G+
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVVVPAPQSHQVLIKVHACGVNPVETYIRSGTYSRKPAL----PYTPGSDVAGIIESVGDGVSAFKKGDRVFCF----STVSGGYAEFALSADNTTYPLPETLDFRQGAALGIPYFTACRALFHSARARAG-----ESVLVHGASGGVGLATCQIARAHGLKVLGTAGS 182          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: QOR_PIG (Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  137 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG 703
            G+ LM A++   +GG        ++ +P P  ++VL+K+ A  +NPVD  I+ G   ++P L    P  P  D              FK GD+V      + T  G  AE+A+A + +    P ++   +G+ + +   TA  AL  SA VK       + +L+  ASGGVG  A Q+A+     V  + G
Sbjct:    4 GQKLMSAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKPLL----PYTPGLDVAGIVEAVGEHVSSFKKGDRVFT----VSTLSGGYAEYALAADDTVYMLPEKLDFKQGAAIGIPYFTACLALLHSACVKAG-----EIVLIHGASGGVGIAACQIARAYGLKVLGTAG 181          
BLAST of FC923204 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 59/211 (27.96%), Postives = 91/211 (43.13%), Query Frame = 2
Query:  110 HRVLAVKMAGKPLMHAVQYNSYGGGAA--DLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK------------FPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGG*LAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC 700
            +R  +   A + +M A   + YG        K+  LP+     +EV++K+ A  LNP+D  ++ G     +  K            FP I   D            K FK GD+V A +       G LAEF V   +    +P  +   E + +P    TA  A+  + G+  D S + K +L+   SGGVG +A+Q+ K    HVT +C
Sbjct:   16 YRSFSFSAARRTVMPAWVIDKYGKNDVLRFTKNAALPI-IHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP--PWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAK-KRVLILGGSGGVGTFAIQMVKAWGAHVTVTC 222          
The following BLAST results are available for this feature:
BLAST of FC923204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
QORH_ARATH2.323e-7272.82Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL1.841e-6969.23Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
QORL_ARATH9.921e-1531.82Quinone oxidoreductase-like protein At1g23740, chl... [more]
QOR_LAMGU2.210e-1431.46Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_BOVIN2.887e-1431.11Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]
QOR_HUMAN3.770e-1429.84Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=... [more]
QOR_PONAB6.431e-1429.84Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=... [more]
QOR_RAT1.097e-1329.69Quinone oxidoreductase OS=Rattus norvegicus GN=Cry... [more]
QOR_PIG2.444e-1329.32Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 ... [more]
RT4I1_DANRE3.192e-1327.96Reticulon-4-interacting protein 1 homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC31702B11EF StrClemenN Citrus clementina cDNA clone C31702B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923204 ID=FC923204; Name=FC923204; organism=Citrus clementina; type=EST; length=717bp
GACCCAAAGGGAAGCGAGTACACTATCACTGCGTTACATACATATTATAA
TCGTATGCAGAGTGGTCTCTTTGATTCTATCGATAGCACACTCGAAATCC
CAGAAACGGCATCGTGTATTAGCTGTGAAAATGGCAGGAAAGCCTCTTAT
GCACGCGGTTCAGTATAATTCTTATGGTGGAGGAGCTGCTGATTTGAAGC
ATGTTGAACTGCCGGTTCCTACCCCAAGCAAAGATGAGGTTTTGCTTAAA
CTTGAAGCAACTGCTCTAAATCCGGTTGACTGGAAAATCCAGAAGGGCCA
GTTACGCCCTTTTTTGCCTCGCAAGTTTCCTTGCATACCTGCAACTGATG
TAGCAGGAGAGGTCGTAGGGGTAGGATCAGAAGTTAAAATTTTCAAAGCT
GGTGACAAAGTTGTAGCTTTTCTTAACTACCTCGTAACTAATGGAGGTTG
ACTAGCTGAGTTTGCTGTGGCTAAGGAGAGCTCGACAGTTGCTAGGCCAT
CAGAGGTTTCAGCAGCTGAAGGTTCTGGCTTGCCTGTTGCTGGTCTCACT
GCTCACCAGGCCCTTACTCAATCTGCAGGTGTCAAGCTTGATGGAAGTGG
GCAACAGAAAAACATTCTAGTAACTGCTGCCTCAGGGGGTGTAGGTCACT
ATGCTGTTCAGTTGGCGAAGCTTGGAAACACGCACGTGACTGCCTCTTGT
GGGGCTCGCAACATTGA
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