FC923214

Overview
NameFC923214
Unique NameFC923214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11912 contig Ccv1_Contig11912:856..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923214 vs. ExPASy Swiss-Prot
Match: NCLN_RAT (Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 78/249 (31.33%), Postives = 122/249 (49.00%), Query Frame = 3
Query:    3 FGAAPALXXXXXXXXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPHNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGF---KVGLKHKKINISNPRVAWEHEQFSRLRVXXXXXXXXXXXXXXXXXXGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISK 713
            FG AP L             LLE+ARLFS LY+  +T   YN+LF  + GG  NY GT +WL  S D      L++++ + +CL++VG   + L +HVSKPP    ++ +F     +     F      + HKKIN+++  +AWEHE+F+  R+                    ++D R  VD  +  R+ +++AE+L R IY    K    ++ +F +   + V    I S +D L+  PR A  + K
Sbjct:  228 FGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSKPPREGTLQHVFLRELEMVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRL--PAFTLSHLENHRAGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTE--QMQVQQEQIDSVMDWLTNQPRAAQLLDK 471          
BLAST of FC923214 vs. ExPASy Swiss-Prot
Match: NCLN_MOUSE (Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 78/251 (31.08%), Postives = 128/251 (51.00%), Query Frame = 3
Query:    3 FGAAPALXXXXXXXXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPHNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSKPP-----ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVXXXXXXXXXXXXXXXXXXGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISK 713
            FG AP L             LLE+ARLFS LY+  +T   YN+LF  + GG  NY GT +WL  S D      L++++ + +CL++VG   + L +HVSKPP     ++A+++++     +   ++ F   + HKKIN+++  +AWEHE+F+  R+                    ++D R  VD  +  R+ +++AE+L R IY    K    ++ +F +   + V    I S +D L+  PR A  + K
Sbjct:  228 FGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSKPPREGTLQHAFLRELETVAAHQFPDVSF--SMVHKKINLADDVLAWEHERFAIRRL--PAFTLSHLESHRAGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTE--QMQVQEEQIDSVMDWLTNQPRAAQLLDK 471          
BLAST of FC923214 vs. ExPASy Swiss-Prot
Match: NCLN_HUMAN (Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 74/251 (29.48%), Postives = 126/251 (50.20%), Query Frame = 3
Query:    3 FGAAPALXXXXXXXXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPHNYNGTHKWL-----RSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPP-----ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVXXXXXXXXXXXXXXXXXXGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISK 713
            FG AP L             LLE+ARLFS LY+  +T   YN+LF  + GG  NY GT +WL      +    L++++ + +CL++VG   + L +HVSKPP     ++A+++++     +   E+ F   + HK+IN++   +AWEHE+F+  R+                    ++D R  VD  +  R+ +++AE+L R IY    K    ++ +F +   + +    + S +D L+  PR A  + K
Sbjct:  228 FGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGR-GSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRF--SMVHKRINLAEDVLAWEHERFAIRRL--PAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTE--QMQIQQEQLDSVMDWLTNQPRAAQLVDK 471          
BLAST of FC923214 vs. ExPASy Swiss-Prot
Match: NCLN_DANRE (Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 84/264 (31.82%), Postives = 128/264 (48.48%), Query Frame = 3
Query:    3 FGAAPALXXXXXXXXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPHNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSKPPE--NAYIKQIFEGFTNVA-EELGFKVGLKHKKINISNPRVAWEHEQFSRLRVXXXXXXXXXXXXXXXXXXGGLLDSRH---------------FVDETSFIRSVKLVAESLARHIYGYQGK----NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISK 713
            FG AP L             LLE+ARLFS LYS  +T   YN+LF L+ GG  NY GT +WL  + D      L++++ + +CL+++G+ +N L +HVSKPP+  +     + E  T VA +    K  + HKKIN+++  +AWEHE+F   R+                    ++D R                 VD     R+ K++AE+LAR IY    K    +++IF +   + V    + S +D L+  PR A  + K
Sbjct:  221 FGVAPWLSYGADSNGSGVAILLELARLFSRLYSYKRTHAGYNLLFFLSGGGKFNYQGTKRWLEDNLDHTDASLLQDNVAFVLCLDTLGNSDN-LHLHVSKPPKEGSPQYTLLKELETVVAHQHPDLKFAMVHKKINLADDTLAWEHERFGIRRLPAFTLSHLESHRSPARH--SIMDMRSVSPSLEGAGEATTGPHVDLGKLSRNTKVIAETLARVIYNLTEKGVTGDLEIFTE--QMQVQEDQLASLVDWLTAQPRAAQLLDK 479          
BLAST of FC923214 vs. ExPASy Swiss-Prot
Match: NCLN_CHICK (Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:    3 FGAAPALXXXXXXXXXXXXALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPHNYNGTHKWL-----RSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGF---KVGLKHKKINISNPRVAWEHEQFSRLRV 440
            FG AP L             LLE+ARLFS LY+  +T   YN+LF  + GG  NY GT +WL      +    L++++ + +CL+++G   N L +HVSKPP+   ++  F     +     F   K  + HKKIN++   +AWEHE+F+  R+
Sbjct:  227 FGVAPWLSHGADSNGSGVSVLLELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTLGR-GNSLHLHVSKPPKEGTLQHAFLRELEMVVASQFPEVKFSMVHKKINLAEDILAWEHERFAIRRL 379          
The following BLAST results are available for this feature:
BLAST of FC923214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NCLN_RAT1.632e-2531.33Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1[more]
NCLN_MOUSE2.131e-2531.08Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2[more]
NCLN_HUMAN1.058e-2429.48Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2[more]
NCLN_DANRE3.402e-2331.82Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1[more]
NCLN_CHICK1.747e-1935.71Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31702C09EF StrClemenN Citrus clementina cDNA clone C31702C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923214 ID=FC923214; Name=FC923214; organism=Citrus clementina; type=EST; length=718bp
CATTTGGGGCTGCTCCTGCATTATCTGTCGGAAGTGATAGCAATGGTAGC
GGTGTTGTGGCACTTCTTGAGGTAGCTAGGTTATTCTCTCTTCTCTACTC
AAATCCTAAAACTAGAGGAAGGTACAATATACTTTTTGGACTGACGTCAG
GTGGACCTCATAACTACAATGGAACACATAAGTGGCTTCGAAGTTTTGAT
CAGCGGTTGCGTGAGAGCATTGACTATGCTATCTGCTTAAATAGTGTTGG
TTCATGGAATAATGAACTATGGATTCATGTATCTAAGCCTCCAGAAAATG
CCTACATAAAGCAAATATTTGAGGGTTTCACAAATGTAGCTGAGGAGTTG
GGCTTCAAAGTTGGCCTAAAGCACAAGAAAATTAATATCTCGAATCCTCG
AGTAGCTTGGGAGCATGAACAATTTTCAAGACTGAGAGTTACTGCCGCTA
CCCTTTCTGAGCTCTCTGCTGCTCCTGAGCTTTTGGAAAGCACTGGAGGC
TTGTTGGATAGCAGGCATTTTGTTGATGAAACATCATTTATCAGAAGTGT
CAAGTTAGTTGCCGAATCTCTTGCTAGACATATTTATGGTTACCAAGGAA
AGAATATTCAAATTTTTGCAGACAACAGTAGCTTGGCTGTCAACCCCTCT
TACATACGGTCTTGGTTGGATCTGTTGTCACAAACTCCTCGAGTGGCGCC
ATTTATCTCAAAGATGAC
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