FC923216

Overview
NameFC923216
Unique NameFC923216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15372 contig Ccv1_Contig15372:9..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_DANRE (UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D Q++K+P R  DKA V+D  KH  +  N++E   V L+R EG +E+Q+R  C  CGL + Y+ +  ++     ++VDGAL
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQIEKLPMRPRDKARVIDAAKHAHKFCNVEEDEAVYLKRSEG-IERQYRKKCGKCGLLLFYQHQ--MKSTQTTFIVDGAL 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_XENTR (UPF0428 protein CXorf56 homolog OS=Xenopus tropicalis GN=TNeu084h20.1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  DKA V+D  KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+F  +V+GAL
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDKARVIDAAKHAHKFCNTEEEEPVYLRRPDG-IERQYRKKCSKCSLLLFYQHSQKNVAATF--IVNGAL 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_BOVIN (UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDGAKHAHKFCNTEDEETIYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_HUMAN (UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_MOUSE (UPF0428 protein CXorf56 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++     LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_XENLA (UPF0428 protein CXorf56 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  D+A V+   KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+F  +V+GAL
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRARVIGAAKHAHKFCNTEEEEPVYLRRSDG-IERQYRKKCSKCSLLLFYQHSQKNAAATF--IVNGAL 119          
BLAST of FC923216 vs. ExPASy Swiss-Prot
Match: CX056_PONAB (UPF0428 protein CXorf56 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   98 DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 403
            D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+   C  CGL + Y+S+   + A   ++VDGA+
Sbjct:   21 DDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYGKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
The following BLAST results are available for this feature:
BLAST of FC923216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CX056_DANRE1.392e-1340.78UPF0428 protein CXorf56 homolog OS=Danio rerio GN=... [more]
CX056_XENTR1.539e-1241.75UPF0428 protein CXorf56 homolog OS=Xenopus tropica... [more]
CX056_BOVIN2.010e-1239.81UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2... [more]
CX056_HUMAN2.626e-1239.81UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56... [more]
CX056_MOUSE3.429e-1239.81UPF0428 protein CXorf56 homolog OS=Mus musculus PE... [more]
CX056_XENLA9.977e-1239.81UPF0428 protein CXorf56 homolog OS=Xenopus laevis ... [more]
CX056_PONAB1.702e-1138.83UPF0428 protein CXorf56 homolog OS=Pongo abelii PE... [more]
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Properties
Property NameValue
Genbank descriptionC31702C11EF StrClemenN Citrus clementina cDNA clone C31702C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923216 ID=FC923216; Name=FC923216; organism=Citrus clementina; type=EST; length=702bp
GAGGCAGAGCTGAAGCTAAAGCTCGGAGACGCAAAGAGAGAAAACAGGAG
TGCCGAAGAGAACAACGCACACATACTCGAGCGAGGACGCAGCTCCCGAT
GGCCCTGATTCTGATCTCTTCGTCTACTATTGCAAACACTGTGGATCCCA
CGTCCTCATCACTGATACGCAATTGCAGAAAATGCCCAAAAGGAAGACTG
ACAAAGCCTATGTGTTGGACAAGACCAAGCATCTTGCTAGACTGAACATC
AAGGAAGCTGGCAAAGTTCTCCTAAGACGGGGTGAAGGCAAATTGGAGAA
GCAATTTCGGATGAACTGTATAGGTTGTGGGCTATTTGTTTGCTATAGGT
CAGAGGAAACTTTGGAAGTGGCTTCTTTCGTCTATGTTGTCGACGGTGCT
CTTAGTACGGTTGCTGCTGAAGCCAACCCACAGGATGCTCCTGTACCGCC
CTGCATTTCGCAGTTGGAAGGAGGGCTGGTTCAAGTGGCCATAGAGGTGG
AGGACCGTGCGCAACGCTCGGCAATTACAAGAGTGAATGCTGATGACGTT
CGAGTTACTGTGGCGGCACCTGCAGCCCGTGGGGAAGCGAACAATGAACT
TTTGGAGTTCATGGGAAAGGTATTGAGTCTGAGATTGAGCCAGATGACTC
TTCAAGAGGGTGGAATAACAATCAAGCTCCTGGTGGTGAAGATCTGTCAG
CA
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