FC923238

Overview
NameFC923238
Unique NameFC923238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 103/210 (49.05%), Postives = 123/210 (58.57%), Query Frame = 1
Query:   85 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDLL  SF    RGQ SR+ D+E+G +      D G+E F K++Q I+KQ              +EESKSVTKA  MKAIKK MEKDVDEVG IAR +K K+E ++RENLANRQKPGC KG+ VDRSR   T +L K+ K+ M EFQ L                    G R DE+TI           IFQKA  EQGRGQV++TL E
Sbjct:    1 MNDLLKGSFELP-RGQSSREGDVELGEQ---QGGDQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAE 206          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 98/210 (46.67%), Postives = 128/210 (60.95%), Query Frame = 1
Query:   85 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDLL  S +  +R + +R +DIE G   P +S D+G+ GF K++QEIEKQ              +EE+K+VTKA  MK+IK+RME+DVDEVG+I+R +K KIE ++RENL NR KPGC KGT VDR+R   T A+ K+FK+ ++EFQTL                    G R DEE I           IFQKA  EQGRGQ+++TL E
Sbjct:    1 MNDLLKGS-LEFSRDRSNR-SDIESG-HGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAE 207          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 64/216 (29.63%), Postives = 103/216 (47.69%), Query Frame = 1
Query:   85 MNDLLTDSFVSDARGQPSRDNDIEMG------TRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDL + SF     G+PS   D+  G           S+  + ++ F + ++ +++++             +E+SK++  A  +K ++ +M+ DV    K A+ +K K+EA++R N ANR  PGC  G+S DR+R +V N L K+  + M  F  L                    G  PDE T+       +     QKA  EQGRG+VL+T+ E
Sbjct:    1 MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINE 216          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 66/212 (31.13%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   85 MNDLLTDSF--VSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDL + SF   +D + Q   D DIE G         M ++ F + ++ ++  +             NEE K+V  A ++K ++ +M+ DV +V K  + +K K+EA+ + N  +R   GC  G+S DR+R +V + L K+ K+LM  FQ L                    G + DE+TI     + +     QKA  EQGRGQ+L+T+ E
Sbjct:    1 MNDLFSSSFKKYTDLKQQAQMD-DIESGKET------MNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISE 205          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 63/210 (30.00%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   85 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDL ++SF         + N  ++G  V      M ++ F + ++ ++  +             NEE K+V  A ++K ++ +M+ DV  V K  + +K K+EA+ + N  +R  PGC  G+S DR+R +V + L K+ K+LM  FQ L                    G + DE+TI     + +     QKA  EQGRGQ+L+T+ E
Sbjct:    1 MNDLFSNSF---------KKNQAQLGD-VEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISE 200          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.787e-21
Identity = 68/213 (31.92%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   85 MNDLLTDSF--VSDARGQPSRDNDIEMGTRVPRSSSDMG-MEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDL++ SF   +D   Q   D DIE        S D G ++ F   ++ +++ +             NEESK+V  +  +K ++ RM+  V EV K  + +K K+ A+ + N A R+  GC  G+S DR+R +V + L K+ K++M +FQ L                    G + DEET+     + +     QKA  EQGRGQV++TL E
Sbjct:    1 MNDLISSSFKRYTDLNHQVQLD-DIES----QNVSLDSGNLDEFFGYVESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSE 208          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 64/215 (29.77%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   85 MNDLLTDSFVSDAR--GQPSRDNDIEMGTRVPRSSSDMG---MEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXPPDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDLL+ SF +       P   ++IEM        S  G   ++ F   ++ + + +             NE+SK++  A+ +K +KK+M+ DV    K AR +K  +EA++R N  NR  P    G+S DR R +V N L K+ K+ M +F  +                    G  PDE T+       +     QKA  EQGRG++L+T+ E
Sbjct:    1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINE 215          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 48/159 (30.19%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   85 MNDLLTDSFVS------DARGQPSRDNDIEMGTRVPRSSS---DMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTL 534
            MNDL+T SF+S       AR     D D+E G       S   +  + GF ++I+ I+  +             NEE+KS      ++ ++ RME ++  + + A  VK  IE + + N+ANR     ++G+ VDR+R ++TN + K+ ++ M+EF  L
Sbjct:    1 MNDLMTKSFLSYVELKKQARTDMESDRDLEKGEDFNFDFSPADEENLSGFFQEIETIKTLIEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANR--TSFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRL 157          
BLAST of FC923238 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 56/218 (25.69%), Postives = 97/218 (44.50%), Query Frame = 1
Query:   85 MNDLLTDSFVSDARGQPSRDNDIEMG-------TRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXXXXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIXP-PDRNWKQ*AIFQKANSEQGRGQVLNTLEE 714
            MNDL+T SF+S    + +   D+E G               D  +  F ++ + ++ ++             +EESK V KA  +K+++ ++  ++    + A+++K+K+E +++ N   ++      GT V RSR  VTN L K+ KE+M EFQ L                    G   ++E I      N        +A  E G+G+VL T+ E
Sbjct:    1 MNDLMTKSFMSYVDLKKAAMKDMEAGPDFDLEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRL----SGTPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVE 214          
The following BLAST results are available for this feature:
BLAST of FC923238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SY132_ARATH5.333e-4349.05Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH5.519e-4046.67Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY121_ARATH3.043e-2229.63Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY124_ARATH3.364e-2131.13Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH5.738e-2130.00Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH9.787e-2131.92Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY122_ARATH1.082e-1929.77Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY112_ARATH5.202e-1430.19Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
SY111_ARATH8.305e-1225.69Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31702E09EF StrClemenN Citrus clementina cDNA clone C31702E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923238 ID=FC923238; Name=FC923238; organism=Citrus clementina; type=EST; length=736bp
GACCAAAAACAAAACCAAAACCTCCATTTTGGACTTTACAGTCTTCTGTC
GTTCTTTTGTTTCGCTCATTTGAATTTGATCAATATGAACGACTTGCTCA
CGGATTCGTTTGTCAGTGATGCCAGAGGCCAGCCTTCTAGAGATAATGAT
ATCGAAATGGGCACACGGGTTCCTAGGAGTAGCTCTGACATGGGAATGGA
AGGTTTCAATAAGCAGATACAAGAGATCGAAAAGCAGGTTGACAAGCTCT
CTGCGCTACTTAAGAAACTGAAGGATGCAAATGAGGAGTCAAAATCTGTA
ACAAAAGCTTCTGAAATGAAAGCTATCAAAAAGCGGATGGAGAAAGATGT
CGATGAAGTGGGAAAGATTGCACGGAATGTCAAAGCAAAAATAGAAGCTA
TAAACAGAGAGAACTTGGCCAACCGGCAAAAGCCTGGATGTGAAAAGGGA
ACTAGTGTTGACAGATCAAGGATGAATGTCACAAATGCTTTGACAAAAAG
ATTCAAGGAACTAATGACAGAGTTTCAGACTCTAAGACAAAGGATCCAAG
AGGAGTATCGTGAGGTTGTGGAAAGACGAGTCATTACAGTTACTGGAACC
AGACCAGATGAGGAGACAATTNGACCACCTGATAGAAACTGGAAACAGTG
AGCAATCTTCCAGAAGGCAAATTCAGAGCAGGGACGAGGACAGGTGCTGA
ACACCTTAGAAGAATCCAGGAAGACACGATGCCGTC
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