FC923242

Overview
NameFC923242
Unique NameFC923242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1871 contig Ccv1_Contig1871:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1
Query:  217 EEAKAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            ++ K+ +  +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKLS
Sbjct:   39 KKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  238 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            TP+HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++ SYKL+
Sbjct:   52 TPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.059e-17
Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  238 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            +P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++ SYKLS
Sbjct:   47 SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  226 KAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            K   TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++ SYKL
Sbjct:   49 KRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 1
Query:  217 EEAKAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            ++ K+  T SHP +F+MI++A+  L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++ S+KL
Sbjct:   41 KKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  214 REEAKAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            ++ +K     SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++ S+KLS
Sbjct:   51 KKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  226 KAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            K   T SHP Y +MI +A++ L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++AS+K+
Sbjct:   55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  244 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 450
            SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++AS+KL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of FC923242 vs. ExPASy Swiss-Prot
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  214 REEAKAVQTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 453
            + + K    P+HPPY QM+T+A+++L+++ GSS  A+ K++E K+ KD     F K L++ LK F   G L+K++ SYKLS
Sbjct:   14 KTQKKPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKLS 94          
The following BLAST results are available for this feature:
BLAST of FC923242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
H1_SOLPN7.265e-2772.15Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_WHEAT2.342e-1755.56Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_MAIZE3.059e-1755.56Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_SOLLC3.383e-1652.00Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES4.884e-1547.44Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA8.332e-1550.00Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H12_ARATH9.212e-1449.33Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H11_ARATH1.203e-1352.17Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_VOLCA8.622e-1241.98Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC31702F01EF StrClemenN Citrus clementina cDNA clone C31702F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923242 ID=FC923242; Name=FC923242; organism=Citrus clementina; type=EST; length=752bp
GAATAATAAACAATCAAGGCTGTAATTCAAAGGCTTTAGTTTTCTTCTAG
TAATTCTGCGAGATCGTTTTGAGCGGATTCGTTAGTTGCGAAAGTAGATG
GCCACAGAAGGTGAAGCTGTGACGGAGCAGCAGCCGGCTGCGGAGGAGCC
GGAAAAGGTCGTCACTGAGAAGAAGGCCAAGGCTGCTAAGGACAAGAAGC
CCAAGGCTCCTAAAGAGAAGAAGCCAAAGCAGTCCAAACCCCCTCTCATC
CTCCTTATTTTCAGATGATAACGGAGGCACTGATGGCGCTGCAAGATAAG
AGCGGTTCAAGCCCATACGCAATAGCCAAGTACATGGAAGAGAAGCACAA
GGATGAGCTCCCAGCGAATTTCAGGAAAATATTGGCAGTGCAGCTGAAGC
ACTTCGCTGCGAAAGGAAATCTCATCAAGATCAGGGCCTCTTACAAGCTC
TCTGAAGCGGCAGCTGGCAAAACCAAAAAAGAGATCAAGACCAAGGCCAA
GGCCCCAAGGAAAACAAGGTCCGTAACTGCTGCAGCTAAAATCAAAGCAG
AGTCTGCCGCCGCCGCTCCTCCTCCGCCTAAGAAGGCAAAGAAATCGGCT
GCTGCCAAACCAAAGCAGCCCAAATCCATCAAGTCCTCTGCTGCTAAGAA
AGCCAAGAAAGCTACTGCTCAGTAGTAATATGTATGATATAATACTAGTA
AAAGTACAACTAGTTTTCACTTCCTTGTCTGATAGAAGTATCATGTACAT
GT
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