FC923243

Overview
NameFC923243
Unique NameFC923243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14420 contig Ccv1_Contig14420:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 80/178 (44.94%), Postives = 111/178 (62.36%), Query Frame = 2
Query:  161 QCCANPPTLNPN----SGAGHV--EKLGGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSKGITAIGAAGFCWGAEVVVQLGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            QC  NPP  + +    + AG V  +  GGL AYV+G+  S  AV+L SDV+GYEAP LR++ DKVA AG++V VPDF  GD    D  K   EW++ H   K  E+AKP+  ALK +G  ++   G+CWG ++ V++GK   ++A  L HP  VT DD+K V+ P+ ILGA+ D  +P
Sbjct:   28 QCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD--YLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTP 202          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  158 PQCCANPPTLNPNSGAGHVEKLGGLNAYVTGSPDSKLAVLLI-SDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQ--LGKREFIQAAVLLHPSFVTVDDIKGVE--VPLSILGAEIDRLSP 676
            P  C      +  +  G  E++ GL+ Y  GS   K  V++I +DVYG +  N+   ADK A+AG+ V VPD   GD   +D       W + H  +   +     ++ LK +     IG  G+C+GA+  VQ   G      AA + HPSFV++++I+ ++   P+ I  AE D + P
Sbjct:    6 PGKCCFEGVCHDGTPKGRREEIFGLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFP 184          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQ-LGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            G GH  ++  + AYVT SP D+  AV+++ D++G++ PN R +AD +A  G+   VPDFF G +P+   G       W+K     K   E   V++ L+ +     IG  GFCWG  VV Q +     I+A V ++      +D+  ++ P   + AE D + P
Sbjct:   20 GMGHEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIP 183          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQL-GKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIP 183          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQL-GKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIP 183          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQ-LGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            G G   ++  + AYVT SP D+  AV+++ D++G++  N R +AD +A  G+   VPDFF G +P+   G      EW+K     K   E   V++ LK +     IG  GFCWG  VV   +     ++A V ++      +D+  ++ P   + AE D + P
Sbjct:   20 GMGQEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIP 183          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  206 GHVEKLGGLNAYVTGSPDSK-LAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGK-PLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQLG-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            G   ++  + AYV+    S   AV+++ D++G++ PN R +AD + A G+    PDFF G +P+     +    EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AE+D + P
Sbjct:   22 GQEVQIEHIKAYVSKPHSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIP 183          
BLAST of FC923243 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  230 LNAYVTGSPDSK-LAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDP--YVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAEVVVQLG-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSP 676
            + AYV+    S   AV+++ D++G++ PN R +AD + A G+    PDFF G      ++      EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AEID + P
Sbjct:   30 IKAYVSKPHSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIP 183          
The following BLAST results are available for this feature:
BLAST of FC923243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E134_MAIZE1.127e-3444.94Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
AIM2_YEAST6.871e-1631.84Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
CMBL_MOUSE2.611e-1532.93Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_HUMAN9.921e-1532.93Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
CMBL_PONAB1.692e-1432.93Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT1.097e-1331.71Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
CMBL_XENTR5.095e-1129.63Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA8.691e-1130.52Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
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Properties
Property NameValue
Genbank descriptionC31702F02EF StrClemenN Citrus clementina cDNA clone C31702F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923243 ID=FC923243; Name=FC923243; organism=Citrus clementina; type=EST; length=717bp
CCATAGGTGATAGGTCCCCCATTAACAGAACTTTTACCTGTATGGTCTCT
CCATTGGATAAAAATAAAATCATAAAAGTAGTGGCGATATCAGAAAAGAG
TGTTTTCTAAACAGCTGTGCTTACTAAGGAAGGTTGAGCAGAAGAAAAAT
GTCAGGTCCTCAGTGCTGTGCAAATCCACCGACATTGAATCCAAACAGTG
GAGCAGGTCATGTTGAGAAACTTGGTGGACTCAACGCTTATGTCACTGGC
TCTCCTGATTCCAAGCTTGCCGTTCTTCTCATTTCCGACGTTTATGGTTA
TGAAGCTCCAAACTTGAGGAAGCTTGCAGACAAGGTTGCAGCAGCTGGAT
TCTACGTGGCAGTTCCTGACTTCTTTCATGGGGATCCATATGTAGCTGAT
GGTGGGAAACCTCTACAAGAATGGATAAAAGATCATGGTGTGGATAAGGG
ATTTGAAGAGGCAAAGCCAGTTATTCAAGCTCTTAAGAGTAAAGGTATAA
CTGCAATTGGGGCTGCGGGCTTCTGCTGGGGCGCTGAAGTGGTTGTTCAA
CTAGGAAAACGTGAGTTCATCCAAGCTGCTGTGCTGTTACATCCCTCTTT
TGTCACTGTAGATGATATCAAGGGGGTTGAGGTTCCCCTTTCAATTCTAG
GAGCCGAAATTGATCGCTTGTCTCCACAGCTCTCGTGAAGGAATTTGAAG
AGACCTTAATGCCATAT
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