FC923244

Overview
NameFC923244
Unique NameFC923244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14421 contig Ccv1_Contig14421:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: AIG1_ARATH (Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 89/179 (49.72%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  140 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +LQ LFG KI DY+IVVF               YLG   P  LK +L LC  R +LFDN+
Sbjct:   32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNK 209          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 75/167 (44.91%), Postives = 105/167 (62.87%), Query Frame = 2
Query:  176 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY IVVF               Y    CP+ L ++L+LC  R VLFDN+
Sbjct:    6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNK 172          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA4_HUMAN (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 58/172 (33.72%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  161 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +  +FG++   +MI++F               YL RE P+ +++++ +  +R    +N+
Sbjct:   26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKMFGERARSFMILIF--TRKDDLGDTNLHDYL-REAPEDIQDLMDIFGDRYCALNNK 192          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA4_RAT (GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE +   + DG+ + V+DTPG+FD         KEI +C+ +   G HA+L           EE  A   L ++F KK   +MI++                YL    P+ L+E++    NR  LF+N+
Sbjct:   33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFDTEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTV-EEHKATRKLLSMFEKKARRFMILLL--TRKDDLEDTDIHEYL-ETAPEVLQELIYEFRNRYCLFNNK 192          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA7_HUMAN (GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 54/164 (32.93%), Postives = 83/164 (50.61%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDN 673
            +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD     +   KEI +CI  +  G HA++          +EE+  +  ++ +FGK    +M+++F                   +    LK I++ C NRC  F N
Sbjct:   11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFDTKESLDTTCKEISRCIISSCPGPHAIV-LVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRKEELEGQSFHDFI---ADADVGLKSIVKECGNRCCAFSN 169          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA4_MOUSE (GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD         +EI + + +   G HA+L           EE  A   +  +FGK+   +MI++                YL  + PK  +E++    NR  LF+NR
Sbjct:   33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTV-EEHKATQKILDMFGKQARRFMILLL--TRKDDLEDTDIHEYL-EKAPKFFQEVMHEFQNRYCLFNNR 192          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA8_HUMAN (GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  173 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            E  ++L+G+  +GKSATGN+ILG+  FKS+ S   V   C+ +  VL++ +VV VIDTP LF   A +E   + I  C+ ++   +HA+L          ++EE A   +Q +FG +   ++I+VF                   E  KPLK+++Q  + R  +F+N+
Sbjct:   10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETA-KGIQQVFGAEARRHIIIVFTRKDDLGDDLLQDFI----EKNKPLKQLVQDYEGRYCIFNNK 171          

HSP 2 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = 2
Query:  182 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG---LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            +VLVGR+G GKSATGNSILG   F SR  +  VT T +  R    DGQ V V+DTP    + D       + +E+ +C+   + G               +E++ A+  L+ +FG     Y I++F               ++     K L+ I + C  R   F+N+
Sbjct:  441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSCCEKG-DTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLF--TRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNK 604          

HSP 3 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 58/174 (33.33%), Postives = 80/174 (45.98%), Query Frame = 2
Query:  158 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            +P   E TV+LVG+ G GKSA GNSILGR+AF++  S   VT S     R+  K  + V++ID P +         V K I         G HA L          + +EA L ++Q  FG+K F+YMI++                   R   K L  ++Q C NR   F+ R
Sbjct:  242 NPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRK--KKVSIIDAPDISSLKNIDSEVRKHIC-------TGPHAFL-LVTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFL---RNSNKALYGLIQKCKNRYSAFNYR 402          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA2_HUMAN (GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  164 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNR 676
            S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    + IV+F               Y+     K L +++  C  R   F+NR
Sbjct:   19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNR 185          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA1_HUMAN (GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  158 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNRLXMRPRE 697
            S     R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  +M++VF               Y+     + L+E++  C  R   FDNR   R +E
Sbjct:   22 SRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRAC-TTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLKWMVIVF--TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQE 198          
BLAST of FC923244 vs. ExPASy Swiss-Prot
Match: GIMA5_HUMAN (GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 54/190 (28.42%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  104 GTFYMMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDN 673
            G +  M     +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L          Q +  A+  ++ +FG     +++++F               Y+       LK++++ C+ R   F+N
Sbjct:    7 GKYGTMAEGRSEDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQ-DTVAIRKVKEVFGTGAMRHVVILF--THKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNN 189          
The following BLAST results are available for this feature:
BLAST of FC923244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AIG1_ARATH1.565e-4149.72Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 ... [more]
P2A03_ARATH5.210e-3744.91Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabi... [more]
GIMA4_HUMAN3.069e-2133.72GTPase IMAP family member 4 OS=Homo sapiens GN=GIM... [more]
GIMA4_RAT9.239e-1835.15GTPase IMAP family member 4 OS=Rattus norvegicus G... [more]
GIMA7_HUMAN2.688e-1732.93GTPase IMAP family member 7 OS=Homo sapiens GN=GIM... [more]
GIMA4_MOUSE1.334e-1633.33GTPase IMAP family member 4 OS=Mus musculus GN=Gim... [more]
GIMA8_HUMAN2.972e-1632.74GTPase IMAP family member 8 OS=Homo sapiens GN=GIM... [more]
GIMA2_HUMAN3.882e-1630.41GTPase IMAP family member 2 OS=Homo sapiens GN=GIM... [more]
GIMA1_HUMAN1.129e-1532.04GTPase IMAP family member 1 OS=Homo sapiens GN=GIM... [more]
GIMA5_HUMAN1.927e-1528.42GTPase IMAP family member 5 OS=Homo sapiens GN=GIM... [more]

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Properties
Property NameValue
Genbank descriptionC31702F03EF StrClemenN Citrus clementina cDNA clone C31702F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923244 ID=FC923244; Name=FC923244; organism=Citrus clementina; type=EST; length=699bp
GATACAAAACACTTCCAAAAAAGTCAAGTCTCTTTCCCTTTCTCATCTCT
TCATACCCAGGCCAACGCAATCCCTTTTGCTCTCCTGTCTTCGCAAGTAA
ATTGGAACTTTTTATATGATGGGAGGAAGTGCGATTGATGATGATTGGGA
GCTTACTTCTCCATCTAATGGGGAGCGCACTGTGGTTTTAGTTGGCCGTA
CTGGCAATGGCAAAAGTGCGACGGGCAACAGTATTCTTGGAAGAAGAGCC
TTCAAGTCAAGGGCTAGTTCATCTGGTGTTACTAGTACCTGTGAAATGCA
GAGAACCGTGCTCAAAGATGGCCAAGTTGTTAATGTCATTGATACCCCTG
GACTTTTTGATTTTTCCGCTGGCTCTGAGTTTGTTGGCAAGGAAATTGTC
AAATGTATCGGTATGGCCAAGGATGGGATCCATGCAGTCCTTGTAGTTTT
CTCTGTTAGAAGCCGTTTTTCTCAAGAGGAAGAAGCTGCACTACACAGTT
TGCAGACCTTGTTCGGGAAAAAAATTTTTGACTATATGATTGTTGTTTTC
ACTGGAGGGGATGAACTTGAAGATAATGATGAAACGTTAGAAGATTATTT
GGGTCGTGAGTGTCCAAAGCCTTTAAAGGAAATCCTTCAACTATGTGATA
ATAGGTGCGTGCTTTTTGATAACAGACTAANGATGAGGCCAAGAGAACT
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