FC923246

Overview
NameFC923246
Unique NameFC923246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14413 contig Ccv1_Contig14413:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923246 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.415e-77
Identity = 139/179 (77.65%), Postives = 157/179 (87.71%), Query Frame = 1
Query:  145 IKAVAS-EGFATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 678
            ++AVAS +  A   + E KVKLGGSDLKVTKLG+G WSWGD SYWN+FQWDDRK+KAAK AFDTSLDNGI FFDTAEVYGS+ S GAI+SETLLGRFI+ERK+R P  EV+VATKFAALPWR GR+SV+ ALKDSL RL LSSV+LYQLHW G+WGNEG++DGLGDAVEQGLVKAVGVS
Sbjct:   30 VRAVASGDSVAPAISEESKVKLGGSDLKVTKLGIGVWSWGDNSYWNDFQWDDRKLKAAKGAFDTSLDNGIDFFDTAEVYGSKFSLGAISSETLLGRFIRERKERYPGAEVSVATKFAALPWRFGRESVVTALKDSLSRLELSSVDLYQLHWPGLWGNEGYLDGLGDAVEQGLVKAVGVS 208          
BLAST of FC923246 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  205 LGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF----AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS 678
            LG +DL+V++L +G  ++G+    N+  W   + ++++     +L+ GI FFDTA  Y   +S      E ++GR +++  +R+   +V VATK       LP  L R  +L ++ DSL RLG+  V++ Q+H W      E  ++ L D V+ G  + +G S
Sbjct:    6 LGKTDLRVSRLCLGCMTFGEPDRGNH-AWTLPE-ESSRPIIKRALEGGINFFDTANSYSDGSS------EEIVGRALRDFARRE---DVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGAS 157          
BLAST of FC923246 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  205 LGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR-------LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQGLVKAVGVS 678
            +  + ++ +++G+G W+ G T       W     K +      +LD GIT  DTA  YG    FG   SE ++G+ IKE  +RD   +V +ATK  AL W+         R  ++  +++SL RL    ++LYQ+HW   +   E   + + +  + G ++A+GVS
Sbjct:    6 IADTGIEASRIGLGTWAIGGT------MWGGTDEKTSIETIRAALDQGITLIDTAPAYG----FG--QSEEIVGKAIKEYGKRD---QVILATK-TALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVS 155          
The following BLAST results are available for this feature:
BLAST of FC923246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y1669_ARATH8.415e-7777.65Uncharacterized oxidoreductase At1g06690, chloropl... [more]
YAJO_ECOLI9.479e-1231.29Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
GS69_BACSU2.112e-1130.12General stress protein 69 OS=Bacillus subtilis GN=... [more]
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Properties
Property NameValue
Genbank descriptionC31702F05EF StrClemenN Citrus clementina cDNA clone C31702F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923246 ID=FC923246; Name=FC923246; organism=Citrus clementina; type=EST; length=682bp
GACATTAATACTCAAGAGTCACATAGATTTTATCTTGGAAATTTTCGTAA
GATATAGGAACCCTCTAGTGGGTTACAGTCTAAAATGGCCATGCATGTGA
GCGGTGCATGCTTTTCTGTGTTCAGTGGGAGCAGAGTTGGCAACATAAAA
GCCGTTGCTTCTGAGGGTTTTGCTACAGTGAAAACAGCCGAAGACAAAGT
GAAATTAGGGGGGTCTGATTTGAAGGTGACAAAGCTTGGCGTTGGGGCTT
GGTCATGGGGTGACACTAGCTACTGGAATAACTTCCAATGGGATGACAGG
AAGATGAAGGCTGCTAAAGCTGCTTTTGATACCAGTCTGGATAATGGAAT
TACTTTTTTCGATACTGCTGAAGTATATGGTTCTAGGGCCTCATTCGGTG
CTATAAATTCCGAAACACTACTGGGAAGATTTATAAAGGAAAGGAAACAA
AGGGATCCGGAAGTGGAGGTTACTGTTGCAACCAAGTTTGCAGCTTTGCC
GTGGAGGCTGGGCCGTCAGAGTGTCCTCGCTGCTCTTAAGGATTCCCTTT
TCCGGCTTGGCCTTTCTTCTGTTGAACTTTATCAGCTGCACTGGGCTGGA
ATTTGGGGAAATGAAGGGTTTATTGATGGTCTTGGAGATGCTGTCGAGCA
GGGCCTAGTGAAAGCTGTTGGTGTTTCAATTA
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