FC923249

Overview
NameFC923249
Unique NameFC923249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2016 contig Ccv1_Contig2016:16..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_SCHPO (OPA3-like protein OS=Schizosaccharomyces pombe GN=SPBC1703.11 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  170 VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQ--RRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEA-RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 595
            +K+G+L ++TLSKP+A  +K QA  H  FR++ +  AQ  HR   R+    R         +RPLN+ KAV A    + E FIFTVAG A++FE  R+ R E  R++E+ +  L        GL  E+  + + +E+   L K++
Sbjct:    6 LKIGSLLVRTLSKPIANTIKAQAKEHKAFRKACIEFAQWMHRAEFRITGINRAKSGGANVRLRPLNDAKAVDAGATFLSETFIFTVAGGAILFETWRARRKEKNRRDEVAEAIL--------GLQHEIVRINEIMEKQFVLQKKK 142          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_DANRE (Optic atrophy 3 protein homolog OS=Danio rerio GN=opa3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQL 583
            +V   P+ KL  L ++ LSKPVA ++K  A     F+  I +  AQA H I  R + RI G   G  I+PLNE+ A +   +L+GE  IF + G  ++ E  R A +  RKEE   Q + +L+ +   LA   E L  +I E+ +L
Sbjct:    2 VVGAFPIAKLLYLGVRQLSKPVANRIKAGARRSEFFKNYICLPPAQAYHWIEMRTKMRIMGFR-GSTIKPLNEDAAAELGAELLGEAIIFVIGGGCMVLEYSRQAANSRRKEEELAQSITSLQTQLGELALTTETLDAQIREVNRL 146          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_XENLA (Optic atrophy 3 protein homolog OS=Xenopus laevis GN=opa3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSG 607
            +V   P+ KL  L ++ +SKP+A ++K  A     FR  + +  AQ  H +  R + RI G   G  I+PLNE+ A +   +L+GE  IF + G  ++ E  R + +  RKEE    E+EA     E     L LL +++E   ++ +++ L+G
Sbjct:    2 VVGAFPIAKLLYLGIRQISKPLANRIKAGARRSEFFRTYVCLPPAQVYHWVEMRSKMRIMGFR-GAVIKPLNEDAAAELGAELLGEAIIFLIGGGCMVAEYSRQSANSHRKEE----EMEARLGSMEAEIARLGLLTEELETRARVTERQQLAG 150          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_HUMAN (Optic atrophy 3 protein OS=Homo sapiens GN=OPA3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIE 568
            +V   P+ KL  L ++ +SKP+A ++K+ A     F+  I +  AQ  H +  R + RI G   G  I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    ALR     LA  LE L+ +++
Sbjct:    2 VVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGFR-GTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDEVGHLALALEALQAQVQ 141          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_MOUSE (Optic atrophy 3 protein homolog OS=Mus musculus GN=Opa3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 586
            +V   P+ KL  L ++ +SKP+A ++K  A     F+  I +  AQ  H +  R + RI G   G  I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    AL+     LA  LE L+ + + +  L+
Sbjct:    2 VVGAFPMAKLFYLGIRQVSKPLANRIKDAARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGFR-GTTIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQTQQRNKEEEQRAAWNALQDEVGRLALALEALQAQAQAMPSLS 147          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA32_DROME (Putative OPA3-like protein CG13603 OS=Drosophila melanogaster GN=CG13601 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIR--PLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIF 613
            ++ V P  KLG LA+K +SKP+A  +K  A   P FR+ I  +  A       ++ +++    GG +   PLNE  A++   +L+GE  IF++    +IFE  R    E +K E+ + E   L      +   LE    +I E+ ++        IF
Sbjct:    2 VIGVFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYIC-MPPAQFYNWVEVKTKMWALNMGGRVNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIFEYSRQTIKENKKNELAQSEKMELTNMLTEMNFRLERQDAQIREMTRVLADLDSRNIF 157          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_DICDI (OPA3-like protein OS=Dictyostelium discoideum GN=DDB_G0284959 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 40/140 (28.57%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  155 MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 574
            MVLP++K+G+L +K+L+KP++ ++K +A+  P F   +V  A+  H++  ++ +  +   T  +   LN   A+    +++ E F+ +VA   +++E  RS+  + +KE       EAL+ R + L  +LE+ ++ I  L
Sbjct:    1 MVLPLLKVGSLLIKSLAKPLSKQIKIRASKSPIFHDRVVRGARLWHKLDLKLTK--FNGDTTRKPVDLNVNAAIDLGTEIVSEAFLLSVAIGLLLYETSRSSEKDKKKE-------EALQNRFKNLEEKLEVQQETINNL 131          
BLAST of FC923249 vs. ExPASy Swiss-Prot
Match: OPA3_BOVIN (Optic atrophy 3 protein homolog OS=Bos taurus GN=OPA3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  149 LVMVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIE 568
            +V   P+ KL  L ++ +SKP+A ++K+ A     F+  I +  AQ  H +  R + R+ G      I+PLNEE A +   +L+GE  IF VA   ++ E  R    + RKE  +    +A+R   + LA  LE L+ +++
Sbjct:    2 VVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRAKMRLMGF-NAETIKPLNEEAAAELGAELLGEATIFLVACGCLVLEYSRQKTQQRRKEGEQLAAWDAMRDEVDHLALVLEALQAQVQ 141          
The following BLAST results are available for this feature:
BLAST of FC923249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OPA3_SCHPO8.901e-1635.86OPA3-like protein OS=Schizosaccharomyces pombe GN=... [more]
OPA3_DANRE5.769e-1536.30Optic atrophy 3 protein homolog OS=Danio rerio GN=... [more]
OPA3_XENLA9.211e-1331.82Optic atrophy 3 protein homolog OS=Xenopus laevis ... [more]
OPA3_HUMAN2.052e-1234.04Optic atrophy 3 protein OS=Homo sapiens GN=OPA3 PE... [more]
OPA3_MOUSE4.571e-1232.65Optic atrophy 3 protein homolog OS=Mus musculus GN... [more]
OPA32_DROME1.018e-1129.30Putative OPA3-like protein CG13603 OS=Drosophila m... [more]
OPA3_DICDI2.269e-1128.57OPA3-like protein OS=Dictyostelium discoideum GN=D... [more]
OPA3_BOVIN3.870e-1131.91Optic atrophy 3 protein homolog OS=Bos taurus GN=O... [more]
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Properties
Property NameValue
Genbank descriptionC31702F08EF StrClemenN Citrus clementina cDNA clone C31702F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923249 ID=FC923249; Name=FC923249; organism=Citrus clementina; type=EST; length=713bp
GAGAAAATTCAGCCATGAACCATCTTGTTCATCAAGAAAATAATCCAAAT
CAGCAAGAATTTCAATCATAAAATTTGATTTGCTTTTTGTTAGTTCATAG
AGACAAAAGATCAAACAATTGGCGATCATTATGCAAATCTAAGAGTAATT
AGTAATGGTTTTGCCAGTAGTGAAGCTCGGAACGCTCGCATTAAAAACGC
TGAGCAAACCTGTAGCTGCGAAGCTCAAGCAACAAGCTGCTATTCACCCT
CGATTTCGTCAGTCCATCGTCGGTATTGCCCAGGCAAATCATCGAATCAC
GACAAGAATGCAAAGACGCATCTATGGTCATGCAACTGGTGGTGAAATAC
GTCCTTTGAATGAGGAGAAAGCTGTTCAGGCTGCTGTAGACCTTATTGGG
GAAATCTTTATTTTCACGGTTGCAGGTGCAGCTGTGATCTTTGAGGTACA
AAGAAGTGCCAGATCAGAGGCCAGAAAGGAAGAGATTCGCAAACAAGAGC
TGGAGGCATTGAGGCAAAGAGATGAAGGCTTAGCAAGAGAATTAGAACTT
CTGAGGCAAAAAATTGAAGAATTGGAGCAGCTTGCCAAGCAACGAGGTCT
CAGTGGTATTTTCAGCTTCAAACATGCTACGGCAGATGAGGCAAAGTTNA
GCAAACCAGCTTGATTGGGGCAAAGATTTGACAATAATTTGGCTATCATT
TTCAATATACCAT
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