FC923253

Overview
NameFC923253
Unique NameFC923253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14423 contig Ccv1_Contig14423:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  120 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            H  PL+G+  AIKD+  + G VT  G+            T  A L     GA  +GKT MDE A   + EN  YG   NPW  +RVP              L   SLGTDTGGS+R PAS+CG+ G +P++G VS  G++  A S D +G
Sbjct:   66 HASPLAGIPLAIKDVLCMQGTVTTCGSRILENFVPPYDGTVIARLR--EAGAIFLGKTNMDEFAMGSSTENSAYGVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIG 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 58/150 (38.67%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  120 HQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            H+ PL+G+  AIKD   V G     G+             A  +  +LS GA  +GKT MDE A   + E  H+G   NPW  +RVP                 F+LG+DTGGSVR PAS+CG+ G +P++G+VS  GV+  A S + VG
Sbjct:   58 HEGPLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVG 205          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWF 575
            PL+G+  A KD+F  +G +T  G+   A  +  +   A  V  + + GA S+GKT MDE A   + EN H+G   NPW   R+P             +LV  + GTDTGGSVR PA+  G+ G +P++G VS  G+I  A S D  G F
Sbjct:   67 PLTGIPLAHKDVFCTEGVLTTCGSKMLA--NFVSPYDAHVVSLLKTAGAVSLGKTNMDEFAMGSSNENSHFGPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_LEGPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            PL+G+  A+KD+F      T   +   A   +   +T   V      GA  IGKT MDE A   + EN ++G+  NPW  +RVP              LV F++G+DTGGS+R PA++CGI G +P++G VS  G++  A S D  G FA
Sbjct:   66 PLTGIPMALKDLFCTKRLNTTCASKMLANFQAPYDATI--VTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFA 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            PL+G+  A+KD+F      T   +   A   +   +T   V      GA  IGKT MDE A   + EN ++G+  NPW  +RVP              LV F++G+DTGGS+R PA++CGI G +P++G VS  G++  A S D  G FA
Sbjct:   66 PLTGIPMALKDLFCTKRLNTTCASKMLANFQAPYDATI--VTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFA 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFA 578
            PL+G+  A+KD+F      T   +   A   +   +T   V      GA  IGKT MDE A   + EN ++G+  NPW  +RVP              LV F++G+DTGGS+R PA++CGI G +P++G VS  G++  A S D  G FA
Sbjct:   66 PLTGIPMALKDLFCTKRLNTTCASKMLANFQAPYDATI--VTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFA 213          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_DEIRA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus radiodurans GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 68/180 (37.78%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  126 LPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLL-QLPDDA-SLVRPSR 659
            LPL+G+   +KD  +V G  T  G+   A   S  T+TA   L     GA  +GK  MDE A   + E+   G   NPW  +RVP              +   SLG+DTGGSVR PA+ CG++GF+P++G VS  G++  A S D +G FA   + L  +  V+    P DA SL  P+R
Sbjct:   65 LPLAGVPIVVKDNINVTGTRTTCGSRMLANYVSPYTATAAQKLQ--GAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDHERVPGGSSGGSAVAVAAGISPVSLGSDTGGSVRQPAALCGVYGFKPTYGRVSRYGLVAYASSLDQIGPFARSAEDLALLMNVIAGHDPRDATSLDAPAR 242          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_NEIM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   87 EKLVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVG 569
            ++ + Q ++SA    L+G+  A KDIF   G  +   +       S+ T+T   V  +L  G  ++G+T MDE A     EN  YG   NPW P+ VP             +L   +LG+DTGGS+R PAS+CGI G +P++G+VS  G++  A SFD  G
Sbjct:   57 DERIAQGNASA----LTGIPVAYKDIFCQTGWRSACASKMLDNFISSYTATV--VQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAG 211          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAW 581
            PL G+  AIKD+   DG  T  G+   A       +T   +  +++ GA  +GK   DE A   + EN  Y   TNPW P RVP               V  +LGTDTGGS+R PA+ CGI G +P++G VS  G+I    S D +G  AW
Sbjct:   71 PLDGIPIAIKDVICTDGVPTTAGSRILAGFRPPYNATV--IERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAW 219          
BLAST of FC923253 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  129 PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPWAPDRVPXXXXXXXXXXXXXKLVGFSLGTDTGGSVRAPASYCGIFGFRPSHGSVSTAGVIPMAQSFDTVGWFAW 581
            PL G+  AIKD+   DG  T  G+   A       +T   +  +++ GA  +GK   DE A   + EN  Y   TNPW P RVP               V  +LGTDTGGS+R PA+ CGI G +P++G VS  G+I    S D +G  AW
Sbjct:   71 PLDGIPIAIKDVICTDGVPTTAGSRILAGFRPPYNATV--IERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAW 219          
The following BLAST results are available for this feature:
BLAST of FC923253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SYNFM1.702e-2240.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METMA1.441e-2138.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_AZOSE1.882e-2138.93Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_LEGPL2.458e-2138.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPC2.458e-2138.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPA2.458e-2138.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DEIRA3.210e-2137.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_NEIM04.192e-2136.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CHLSY4.192e-2138.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA4.192e-2138.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC31702F12EF StrClemenN Citrus clementina cDNA clone C31702F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923253 ID=FC923253; Name=FC923253; organism=Citrus clementina; type=EST; length=719bp
GCCAACCATGAACGTTGAGAGCCTGGTAGACACTTTTGACAGTAGCTAAA
ATGGCTTCAAGAGACTCGGATTATGGAGCTTTCATGGAGAAACTTGTTCT
TCAACCAAGCTCTTCGGCTCATCAACTTCCTTTAAGTGGCCTCACTTTTG
CAATTAAAGACATATTTGATGTGGATGGACATGTCACTGGATTTGGAAAT
CCTGATTGGGCAAGGACTCATTCTGCTGCCACATCAACCGCGCCTGCTGT
TTTGGCTGTGTTAAGTGGAGGTGCCACATCTATTGGTAAAACTATCATGG
ATGAAATGGCATACAGTATAAATGGAGAAAATAAGCATTATGGAACACCC
ACAAATCCATGGGCACCAGACCGAGTACCTGGAGGATCTTCTAGTGGATC
TGCTGTCGCAGTTGGTGCTAAGCTTGTAGGCTTTTCCTTGGGAACCGATA
CTGGTGGAAGTGTAAGGGCCCCTGCCTCGTATTGTGGGATTTTCGGGTTT
CGGCCTTCACACGGTTCCGTTTCTACTGCTGGAGTCATTCCAATGGCCCA
GAGTTTCGACACTGTAGGATGGTTTGCTTGGGATCCTAAAATTTTGAATC
GAGTTGGACGTGTTCTACTGCAGTTGCCTGATGATGCAAGTCTGGTCAGA
CCTAGTCGGGTGATCTTTGCCGAAGATTTGCTTGCACTTTCAAGCATTCC
AGTGATCGAATACTCAGGT
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