FC923254

Overview
NameFC923254
Unique NameFC923254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923254 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:    9 DSKAELSLSPSHVATIGNPIHVSAASSMLSASPTTTLDMIQPGFLFDDAKK--SSVQQVEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQR 308
            DS   L+   SH  +   P+  +  SS+    P TT+DMI+       +KK  S   +++ P + ++LV+QMAS+LTKDPNFTAALAAA++G+   Q  T++
Sbjct:  210 DSNNGLNRHISHGGSASTPVAANRRSSL--TVPVTTVDMIE-------SKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNHTEK 302
The following BLAST results are available for this feature:
BLAST of FC923254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK40_ARATH5.190e-1240.20Probable WRKY transcription factor 40 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC31702G01EF StrClemenN Citrus clementina cDNA clone C31702G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923254 ID=FC923254; Name=FC923254; organism=Citrus clementina; type=EST; length=363bp
AGCCTACGGATTCAAAAGCTGAATTATCATTGAGCCCTAGCCATGTTGCA
ACTATTGGAAATCCTATTCATGTTTCTGCGGCGTCATCGATGCTATCAGC
AAGCCCTACTACAACTCTTGATATGATTCAACCTGGATTTTTGTTTGATG
ATGCCAAAAAATCATCAGTTCAACAAGTTGAAGCTCCAGCAATCCATCAG
ATTTTGGTCCAACAAATGGCTTCTAATTTGACCAAAGATCCTAATTTTAC
AGCAGCACTTGCAGCAGCTATTTCAGGAAGATTTGCTGATCAGGCCCGAA
CACAAAGATGGTCACTCTAGCTAGCCAGGATCAACAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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