FC923258

Overview
NameFC923258
Unique NameFC923258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig770 contig Ccv1_Contig770:174..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.872e-98
Identity = 164/222 (73.87%), Postives = 193/222 (86.94%), Query Frame = 1
Query:    1 QTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS------FAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGPVA 648
            +TN D SLSGPVGQVY++ VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +I+VW+L+ LQCIQTLT+H+SVVMSL+CWDQ LLSCSLD T+K+W A + GNLEVTYTH EEHGVLALCG+ D+E KPVLLC+CNDN++R YDLPS      F ERGKIFAKQEIRAIQ+GPGG+FFTGDGTGQV+VW+WC  P A
Sbjct:  219 ETNADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSLGLFIRFTERGKIFAKQEIRAIQIGPGGIFFTGDGTGQVKVWKWCTEPTA 440          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.171e-98
Identity = 162/210 (77.14%), Postives = 190/210 (90.48%), Query Frame = 1
Query:    1 QTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQW 630
            Q N DLSL+GPVGQVY++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDNSI+VW+L+ LQCIQTLTEHTSVVMSL+CWDQ LLSCSLD T+K+W AT+ GNLEVTYTH EE+GVLALCG+ D+E KPVLLCSCNDNS+  YDLPSF ERGKI AKQEIR+IQ+GPGG+FFTGDG+GQV+VW+W
Sbjct:  212 QNNADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSFTERGKILAKQEIRSIQIGPGGIFFTGDGSGQVKVWKW 421          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.276e-93
Identity = 158/210 (75.24%), Postives = 186/210 (88.57%), Query Frame = 1
Query:    1 QTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQW 630
            QT  +++L+GP GQVYA+AVGN+LLFA TQDG ILAW+F+  TN FEPAASL GH LAVVSLVVGA +LYS SMD +IRVW+L TLQCIQTL++HT VVMS+LCWDQ LLSCSLD+TIKVW AT+SG+LEVTYTH EEHG LAL GMPD++ KPVLLCS NDN+VR YDLPSF++RG+IF+KQEIRAIQ+GP GLFFTGDGTG+++VWQW
Sbjct:  218 QTQAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASLVGHQLAVVSLVVGAMRLYSASMDKTIRVWDLATLQCIQTLSDHTGVVMSVLCWDQFLLSCSLDQTIKVWAATESGSLEVTYTHKEEHGALALSGMPDAQSKPVLLCSLNDNTVRLYDLPSFSDRGRIFSKQEIRAIQVGPSGLFFTGDGTGELKVWQW 427          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: C3H59_ARATH (Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.828e-54
Identity = 105/215 (48.84%), Postives = 143/215 (66.51%), Query Frame = 1
Query:    1 QTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT-TNCFEPAASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 639
            Q + D+ L G VGQV+AM   N +LFAGT  G+IL WK   + ++ F+   SL+GH S  V   VVG   LYSGS+D +I+VW+L TLQC  TL +H   V SLLCWD+ L+S SLD TIK+W  +++ +L+V  T  +E  V  LCGM D+E KP++ CS  + +V  +DLPSF ERGK+F+ Q I  + +GPGGL F+GD +G +RVW   +G
Sbjct:  255 QNSKDVHLEGVVGQVHAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTRKQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDLPSFEERGKMFSTQTICTLTIGPGGLLFSGDKSGNLRVWSLASG 469          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: C3H62_ARATH (Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52
Identity = 106/218 (48.62%), Postives = 141/218 (64.68%), Query Frame = 1
Query:    1 QTNTDLSL--SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNG 639
            QT+ DL L  +G VGQV AM + N +LFAGT  G+IL WK    +    F+   SL+GHS  V    VG   LYSGS+D +I++W+L TLQCI TL +HT  V SLLCWD+ L+S SLD TIKVW  +++G L+V  T  +E   V AL GM D+E KP++ CS  + +V  +DLPSF ERG++F+   I  + +GP GL F+GD +G +RVW    G
Sbjct:  199 QTSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKVVQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLPSFQERGRMFSTHTIATLTIGPQGLLFSGDESGNLRVWTLAAG 416          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: MHCKB_DICDI (Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   52 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSF 519
            + + ++LLF G  D +I  + +   +   E   +LKGH   V S+      L+SGS D+SI+VW+L+ L+CI TL  H   V ++L  D+ L S S DKTIKVW   D   LE  YT  +    V  LC          L    ND +++ +DL +F
Sbjct:  466 LCICDNLLFTGCSDNSIRVYDYK--SQNMECVQTLKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDKYLFSGSSDKTIKVW---DLKTLECKYTLESHARAVKTLC-----ISGQYLFSGSNDKTIKVWDLKTF 612          

HSP 2 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 53/154 (34.42%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   43 VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 504
            V  + +    LF+G+ D  I  W        F    +LKGH+  V ++ +    LYSGS D +IRVWNL++L+C  TL  H   V  ++  D+LL + S D TIK+W   D   L    T  E H     C     + K V+ CS +D S+R +
Sbjct:  585 VKTLCISGQYLFSGSNDKTIKVWDLKT----FRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMVICDKLLFTASDDNTIKIW---DLETLRCN-TTLEGHNATVQCLAVWEDKKCVISCS-HDQSIRVW 729          

HSP 3 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 50/167 (29.94%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   19 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 510
            +L G    V+ + + +  LF+G+ D  I  W         E   +L+ H+ AV +L +    L+SGS D +I+VW+L+T +C  TL  HT  V ++      L S S DKTI+VW   +  +LE + T   H+     + +C         +L  + +DN+++ +DL
Sbjct:  537 TLEGHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKT----LECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVW---NLKSLECSATLRGHDRWVEHMVIC-------DKLLFTASDDNTIKIWDL 689          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   22 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            LSG    V  + +  ++L +G+ D  I  W  N+ T  F+  A L+GHS  V  L     KL SGSMD +IR+WN  T +CI  L  HT  V+ L     LL+S S D T+K+W
Sbjct:  269 LSGHSDGVMCLQLVRNILASGSYDATIRLW--NLAT--FQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLW 378          

HSP 2 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 54/209 (25.84%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   22 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFAKQEIRAIQLGPGGLFFTGDGTGQVRVWQWCNGP 642
            L G    V  +   + LL +G+ D  +  W F+          +L+GH+  V  V ++     + SGS D++I++W+LET  C+ T + H   V SL   D  L SCSLD TIK W       +   + H E    +A   +        L+   +D  V+ ++        K  + + + ++ LG   +  +G   G++ +W + N P
Sbjct:  349 LHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGKRI-----TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTLFGHIEGVWEIAADHLR-------LISGAHDGVVKVWEACECVHTLKNHS-EPVTSVALGDCEV-VSGSEDGKIYLWLFNNAP 543          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: MHCKA_DICDI (Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   43 VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 441
            +  +A+    LF+G  D  I  W     +  F    +++GH   V+SL   A+ L+S S DN I++W+L    CI TL  H + V S +  D+ L S S D +IKVW   D   LE  YT  + H +   C M
Sbjct:  998 IKTLALSGRYLFSGGNDQIIYVWDTETLSMLF----NMQGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFSCIDTLKGHWNSVSSCVVKDRYLYSGSEDNSIKVW---DLDTLECVYTIPKSHSLGVKCLM 1123          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 48/163 (29.45%), Postives = 75/163 (46.01%), Query Frame = 1
Query:   22 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 510
            L G V  V  +      + +G  D  +  W     T C     +L+GH+  V SL      + SGS+D SIRVW++ET  CI TLT H S+   +   D +L+S + D T+K+W       L+     N+    +          K  ++ S +D +V+ +DL
Sbjct:  497 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLH---TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDL 651          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: TRAF7_MOUSE (E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   28 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            GPV  +   ++G DLLF+G+ D  I  W    T  C +   +L+GH   V++L +   KLYSGS D +I VW+++ LQ + T+  H + V +L+    +L S SL K IKVW
Sbjct:  321 GPVWCLCVYSMG-DLLFSGSSDKTIKVWDTCTTYKCQK---TLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSL-KAIKVW 427          
The following BLAST results are available for this feature:
BLAST of FC923258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H63_ARATH1.872e-9873.87Zinc finger CCCH domain-containing protein 63 OS=A... [more]
C3H48_ARATH4.171e-9877.14Zinc finger CCCH domain-containing protein 48 OS=A... [more]
C3H17_ORYSJ5.276e-9375.24Zinc finger CCCH domain-containing protein 17 OS=O... [more]
C3H59_ARATH4.828e-5448.84Zinc finger CCCH domain-containing protein 59 OS=A... [more]
C3H62_ARATH1.553e-5248.62Zinc finger CCCH domain-containing protein 62 OS=A... [more]
MHCKB_DICDI8.901e-1635.67Myosin heavy chain kinase B OS=Dictyostelium disco... [more]
POF1_SCHPO1.856e-1340.35F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
MHCKA_DICDI2.052e-1234.59Myosin heavy chain kinase A OS=Dictyostelium disco... [more]
FBXW7_HUMAN3.500e-1229.45F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
TRAF7_MOUSE5.970e-1239.29E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC31702G05EF StrClemenN Citrus clementina cDNA clone C31702G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923258 ID=FC923258; Name=FC923258; organism=Citrus clementina; type=EST; length=713bp
CAAACTAATACTGACCTGAGTCTTAGTGGACCTGTGGGACAAGTTTACGC
AATGGCTGTCGGTAATGATTTACTCTTCGCTGGTACGCAGGATGGGGCTA
TATTGGCATGGAAGTTTAATGTTACCACCAACTGCTTTGAACCAGCTGCG
TCGCTCAAAGGTCACTCTCTTGCAGTGGTATCTTTAGTTGTCGGAGCTAA
TAAGCTTTACTCTGGTTCCATGGACAATTCAATAAGAGTGTGGAACCTTG
AAACTCTGCAGTGCATACAGACTCTAACAGAGCACACTTCAGTCGTGATG
TCACTTCTTTGCTGGGATCAGCTTCTTTTATCATGTTCATTGGACAAAAC
AATAAAGGTGTGGTTTGCTACAGATAGTGGAAACCTGGAAGTGACTTATA
CTCACAATGAAGAACATGGAGTGCTTGCCCTGTGTGGAATGCCTGATTCA
GAAGGCAAGCCAGTCTTGCTGTGCTCTTGCAATGACAACTCTGTCCGCTT
CTATGATTTGCCATCGTTTGCTGAGAGGGGTAAAATTTTTGCCAAACAAG
AGATTCGAGCCATTCAGCTGGGCCCTGGCGGTCTGTTTTTCACTGGTGAT
GGGACTGGTCAAGTGAGAGTGTGGCAATGGTGTAACGGGCCGGTTGCAAC
TTGATGACCAGTGCAATATCATAAGTGCCATTATGTCTTTTGACTCGTCA
TTATCCATTTCCT
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