FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59 Identity = 136/218 (62.39%), Postives = 152/218 (69.72%), Query Frame = 1 Query: 28 MEAVQFSTVASRHYSATGKTFYNSRISAGKSTKFVXXXXXXXXXXXXXXXXXNLFTRETWGLIDSKSXXXXXXXXXXXXXXAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLL 681 MEA+QFS+V T N RI A S+ F NL TRE W + SK+ AEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLK + + +C L+ Sbjct: 1 MEALQFSSV--NRVPCTLSCTGNRRIKAAFSSAFTGGTINSASLSSSR----NLSTREIWSWVKSKTVVGHGRYRRSQVR-AEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGK-SCMLI 210
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31 Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTDL 699 MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V E+AVG +I G+RPDQQ +K+V DELV++MG L A PTVIL+AGLQG GKTT +AKLA +L+ R S L + TD+ Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGR---STLLVATDV 138
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31 Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTDL 699 MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+G +I GV P QQ +KIV DELV LMG L A+ PTVIL+AGLQG GKTT +AKLA YL+ ++R S L + TD+ Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKR---SALMVATDV 138
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.705e-29 Identity = 59/126 (46.83%), Postives = 92/126 (73.02%), Query Frame = 1 Query: 280 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 F L L+ +K++G+ ++++++ E MR++R ALLEADV+ VV+ FV+ VSE+AVG +++ + P QQ++K+V++EL +LMGGE S++ AK PTVI++ GLQG GKTT S KLAN L+ + Sbjct: 3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKK 128 HSP 2 Score: 26.5646 bits (57), Expect = 4.705e-29 Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 669 MLVAGDVYRPAAI 707 MLVA D+YRPAAI Sbjct: 134 MLVAADIYRPAAI 146
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27 Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678 MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ + VAC L Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDL 138
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27 Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678 MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ + VAC L Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDL 138
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663 MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL +L+ + + Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129 HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 660 KSCMLVAGDVYRPAAI 707 K ++V+ DVYRPAAI Sbjct: 130 KKVLVVSADVYRPAAI 145
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663 MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL +L+ + + Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129 HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 660 KSCMLVAGDVYRPAAI 707 K ++V+ DVYRPAAI Sbjct: 130 KKVLVVSADVYRPAAI 145
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663 MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL +L+ + + Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129 HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 660 KSCMLVAGDVYRPAAI 707 K ++V+ DVYRPAAI Sbjct: 130 KKVLVVSADVYRPAAI 145
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678 MF L++ L L+G+ LT +I R+IR AL EADVSLPVVR FV + E+A G + + P QQ+VKIV +EL+ ++GGE +L FAK+ PTV++LAGLQG GKTT++ KLA L+ + VAC L Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDL 138 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |