FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4330 contig Ccv1_Contig4330:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 136/218 (62.39%), Postives = 152/218 (69.72%), Query Frame = 1
Query:   28 MEAVQFSTVASRHYSATGKTFYNSRISAGKSTKFVXXXXXXXXXXXXXXXXXNLFTRETWGLIDSKSXXXXXXXXXXXXXXAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLL 681
            MEA+QFS+V       T     N RI A  S+ F                  NL TRE W  + SK+              AEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLK + + +C L+
Sbjct:    1 MEALQFSSV--NRVPCTLSCTGNRRIKAAFSSAFTGGTINSASLSSSR----NLSTREIWSWVKSKTVVGHGRYRRSQVR-AEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGK-SCMLI 210          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTDL 699
            MF  L   LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+  V E+AVG  +I G+RPDQQ +K+V DELV++MG     L  A   PTVIL+AGLQG GKTT +AKLA +L+   R   S L + TD+
Sbjct:    1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGR---STLLVATDV 138          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTDL 699
            MF  L   LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+G  +I GV P QQ +KIV DELV LMG     L  A+  PTVIL+AGLQG GKTT +AKLA YL+ ++R   S L + TD+
Sbjct:    1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKR---SALMVATDV 138          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.705e-29
Identity = 59/126 (46.83%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  280 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            F  L   L+   +K++G+  ++++++ E MR++R ALLEADV+  VV+ FV+ VSE+AVG  +++ + P QQ++K+V++EL +LMGGE S++  AK  PTVI++ GLQG GKTT S KLAN L+ +
Sbjct:    3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKK 128          

HSP 2 Score: 26.5646 bits (57), Expect = 4.705e-29
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  669 MLVAGDVYRPAAI 707
            MLVA D+YRPAAI
Sbjct:  134 MLVAADIYRPAAI 146          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ +      VAC L
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDL 138          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ +      VAC L
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDL 138          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ + +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129          

HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            K  ++V+ DVYRPAAI
Sbjct:  130 KKVLVVSADVYRPAAI 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ + +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129          

HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            K  ++V+ DVYRPAAI
Sbjct:  130 KKVLVVSADVYRPAAI 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.558e-26
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ + +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK 129          

HSP 2 Score: 25.0238 bits (53), Expect = 1.558e-26
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            K  ++V+ DVYRPAAI
Sbjct:  130 KKVLVVSADVYRPAAI 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678
            MF  L++ L      L+G+  LT  +I    R+IR AL EADVSLPVVR FV  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  +L FAK+ PTV++LAGLQG GKTT++ KLA  L+ +      VAC L
Sbjct:    1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDL 138          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SR54C_ARATH2.247e-5962.39Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNE71.518e-3150.35Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_SYNY39.837e-3150.35Signal recognition particle protein OS=Synechocyst... [more]
SRP54_BACSU4.705e-2946.83Signal recognition particle protein OS=Bacillus su... [more]
SRP54_MYCTU1.018e-2750.00Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO1.018e-2750.00Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_ECOLI1.558e-2645.74Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL61.558e-2645.74Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECO571.558e-2645.74Signal recognition particle protein OS=Escherichia... [more]
SRP54_MYCLE5.586e-2647.83Signal recognition particle protein OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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