FC923262

Overview
NameFC923262
Unique NameFC923262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923262_ssr155 microsatellite FC923262_ssr155:155..166. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig14426 contig Ccv1_Contig14426:1..664. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  322 TYSETRGHNFALNATFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 648
            T +   G++  ++ TFD+++P ++D LV+PGGRA E + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++ E     VVDG
Sbjct:   39 TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEV----VVDG 143          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  313 GHQTYSET---------RGHNFALNATFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 648
            GH+ Y  +          G++  ++ TFDE++P ++D LV+PGGRA E + +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDG
Sbjct:   27 GHEVYIASFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREV----VVDG 143          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  340 GHNFALNATFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 648
            G+   ++  F+E++P ++D LV+PGGRA E + +N+  +++ +K  + GK +ASICHG  IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDG
Sbjct:   45 GYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV----VVDG 143          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  313 GHQTY--SETRG-----HNFALNA--TFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 648
            GH+ Y  S  RG     H + +N    FDE+DP ++D LV+PGGRA E + +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDG
Sbjct:   27 GHEVYVASFQRGKITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEV----VVDG 143          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  337 RGHNFALNATFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGYIIT 660
            +G+    + T++++    Y GLVIPGG++ E + +N+  +++V+ F   GK +A+ICHG  +L +A  VKGR+ T++  ++  LIAAGA + +       VVDG +IT
Sbjct:   44 KGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVIT 147          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  355 LNATFDEIDPSKYDGLVIPGGRASEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 627
            ++ + DE+ P+++D L++PGG + +YL  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA  P+   +  AGA + + E +
Sbjct:   54 IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV 144          
BLAST of FC923262 vs. ExPASy Swiss-Prot
Match: Y967_METJA (Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii GN=MJ0967 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  289 PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPSKYDGLVIPGGRAS-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWIEPETMAACVVDGYIIT 660
            P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  S EYL  N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + +       VVDG +IT
Sbjct:   51 PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYED----RGVVVDGNVIT 182          
The following BLAST results are available for this feature:
BLAST of FC923262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PFPI_PYRHO6.204e-2142.20Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRFU6.860e-2039.67Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
PFPI_PYRAB1.996e-1940.78Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRKO1.690e-1842.15Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
Y1281_ARCFU1.133e-1437.04Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
YHBO_ECOLI5.625e-1437.36Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
Y967_METJA3.412e-1134.56Uncharacterized protein MJ0967 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionC31702G09EF StrClemenN Citrus clementina cDNA clone C31702G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923262 ID=FC923262; Name=FC923262; organism=Citrus clementina; type=EST; length=664bp
GAAAGCATCACAACGGCAGAGAGAGTGAGAGAGAGTGAATCCTCTGGAAA
TGGCAAACAGCAAAGGAGGCAAGAGGAGCGTGCTGCTACTATGCGGCGAT
TACATGGAAGACTACGAGGTTCCTTCTTTCTTCTCCTTCCTGCGCATTCT
TTAGTTAATTAATTAATAAAATAAATATTGAATATTTTTGTTTATTTGTT
TGAGGCGATGGTGCCTTTTCAAGCATTACTGGCTTTCGGAGTCTCAGTTG
ATGCCGCGTGTCCCGGAAAGAAATCCGGTGATGTTTGCCCCACTGCAGTT
CATCAATCGACTGGTCATCAGACATATTCCGAGACACGTGGTCACAATTT
CGCACTCAATGCGACATTTGATGAAATTGACCCGAGCAAATATGATGGCT
TGGTCATACCAGGAGGAAGAGCCTCAGAATATCTTGCTATGAATGATTCT
GTGATTGACTTAGTGAGAAAATTCTCCAACTCGGGCAAAACAATTGCTTC
TATTTGCCATGGGCAGTTAATATTGGCAGCTGCTGATGTGGTCAAAGGTC
GAAAGTGTACAGCATATCCTCCTGTGAAACCTGTGCTTATTGCCGCTGGT
GCTTCTTGGATTGAGCCAGAGACCATGGCAGCTTGTGTTGTTGATGGNTA
CATCATTACTGGGG
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