FC923277

Overview
NameFC923277
Unique NameFC923277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length349
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1031 contig Ccv1_Contig1031:7..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923277 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 2.441e-17
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:  149 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVE 349
            M++RRE+RAS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TGDIHEEVE
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVE 65
[Close]
BLAST of FC923277 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/67 (53.73%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:  149 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVE 349
            M+ RRE R  + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+GDI+EEV+
Sbjct:    1 MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVD 64
The following BLAST results are available for this feature:
BLAST of FC923277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET12_ARATH2.441e-1764.18Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
BET11_ARATH1.134e-1453.73Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionC31703A03EF StrClemenN Citrus clementina cDNA clone C31703A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923277 ID=FC923277; Name=FC923277; organism=Citrus clementina; type=EST; length=349bp
TTCTTTTTTTTCGTTTTAAATTTTTTCCTTCCACTCCGCTGCATTTTCTC
AGCATCCAAACAACTAATTGATCACTGATGCATCATCAACTTGCGTGATC
GTAGAAACAGAGACGAACGCGCGCAGGAGCTGCCGGTTATCGTAAATCAT
GAGTTACAGAAGGGAGCACCGTGCCTCTAAAGGGGCTCTCTTTGATGAGT
ATGACGGCCTTGAGGAAGGTGGTCTTAAGGCCTCATCCTCATATTCCAGT
GGAATCGATGAGCATGACAATGACAAAGCAATCGACGGTCTGAAAGAAAG
AGCAGTTTTTCTGAAGAGATTAACAGGCGACATACACGAGGAGGTAGAA
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