FC923279

Overview
NameFC923279
Unique NameFC923279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14509 contig Ccv1_Contig14509:245..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB3_ARATH (Putative dihydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 9.743e-89
Identity = 162/199 (81.41%), Postives = 181/199 (90.95%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTVY 597
            ++RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I ASFHY NVE+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGVRVHSMVLP LPSST VY
Sbjct:   55 KARGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGVRVHSMVLPGLPSSTQVY 253          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_TRIEI (Dihydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.445e-33
Identity = 82/193 (42.49%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   13 MEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRL 576
            M + GAI+     +G+DIG +     PLE+P+++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F +KAS+G LI P  SIG +LLQQAAI+AS H+ +VEI+E   N + D PS  A + A  LS LG+ YN  ++    K  G    L E+G+R+HS+ LP L
Sbjct:   32 MTLLGAIECQPEYIGQDIGELIG-SGPLEVPILNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAEFAEKASIGTLIIPNFSIGMVLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKTAQMLSELGKTYNVPNVEETEKIEGARGCLAEEGIRIHSVRLPGL 223          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_CYAP4 (Dihydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.582e-33
Identity = 84/198 (42.42%), Postives = 122/198 (61.62%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTD---VKARGQVLGEDGVRVHSMVLPRL 576
            ++  + + GA+D +    G+DIG V  +  PLE+P+++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ F DKASMGCLI P  SIG +LLQQAAI AS ++ +VEI+E   N + D PS  A Q A  L+ LG+ YN   +        ARG  L E+G+R+HS+ LP L
Sbjct:   28 QAADLTLFGAVDRNPSLQGQDIGEVVGIG-PLEVPLLADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLATFADKASMGCLIIPNFSIGMVLLQQAAIQASQYFDHVEIIELHHNQKADAPSGTALQTAQLLAELGKTYNPPAVKETEHLAGARGS-LAEEGIRIHSVRLPGL 223          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_ANAVT (Dihydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.434e-31
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 1
Query:   13 MEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPRL 576
            + + GAIDS     G+D G +  + +PLE+P+ + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L+ F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A  L+ LG+ +N   +    K   ARG + GE G+R+HS+ LP L
Sbjct:   32 LNLLGAIDSSPEHQGKDAGELAGLSEPLEVPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTAELLAELGKTFNSAIVEETEKIPGARGSLAGE-GIRIHSVRLPGL 226          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_ANASP (Dihydrodipicolinate reductase OS=Anabaena sp. (strain PCC 7120) GN=dapB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.434e-31
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 1
Query:   13 MEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPRL 576
            + + GAIDS     G+D G +  + +PLE+P+ + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L+ F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A  L+ LG+ +N   +    K   ARG  L E+G+R+HS+ LP L
Sbjct:   32 LNLLGAIDSSPEHQGKDAGELAGLSEPLEVPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTAELLAELGKTFNSAIVEETEKIPGARGS-LAEEGIRIHSVRLPGL 226          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_NOSP7 (Dihydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.211e-30
Identity = 79/197 (40.10%), Postives = 119/197 (60.41%), Query Frame = 1
Query:   13 MEVAGAIDSHSV---GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPRL 576
            + + GAID HS+    +D G +  + +PLE+P+ + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  L+ F DKAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q A  L  LG+ +N   +    K   ARG +  ++G+R+HS+ LP L
Sbjct:   32 LNLVGAID-HSLEHQDKDAGELAGLSEPLEVPITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQDLADFADKASTGCLIIPNFSIGMVLLQQAAIAASKYFDHVEIIELHHNQKADAPSGTAIQTAQLLGELGKTFNPALVEETEKLPGARGSI-ADEGIRIHSVRLPGL 226          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_MASLA (Dihydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.211e-30
Identity = 77/200 (38.50%), Postives = 119/200 (59.50%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPRL 576
            ++  M + GA+D++    G+D G V  + +P E+P+   L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L+ F +KAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q A  L+ +G+ +N+  +    K   ARG + GE G+R+HS+ LP L
Sbjct:   28 QAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPITDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQLADFAEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGTAIQTAQMLAEMGKTFNQPAVKETEKLPGARGSLAGE-GIRIHSVRLPGL 226          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_CYAP8 (Dihydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.697e-30
Identity = 79/198 (39.90%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            ++  M + GA+D +    G+D+G V      LE+P++ DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F DKAS GCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N + D PS  A + A  LS LG+ YN    ++  T   A+G  L +D +R+HS+ LP L
Sbjct:   28 QAEDMMLVGAVDYNPNYRGQDVGEVAGCGA-LEVPIVDDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADFADKASTGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAQMLSGLGKTYNPPMVKETETIAGAKG-ALVDDNIRIHSVRLPGL 223          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_CYAP7 (Dihydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.522e-30
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLP 570
            ++  M + GA+D +    GED G V     P+E+P++ DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  F +KAS GCLI P  SIG ILLQQAA+ AS ++ +VEI+E   N + D PS  A + A  LS LG+ +N   +      RG   G  E+ + +HS+ LP
Sbjct:   28 QAEDMMLVGAVDLNPKYRGEDAGEVAGCG-PVEVPILDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGEFAEKASTGCLIVPNFSIGMILLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAEMLSELGKSFNPAKVEETETIRGSRGGITEENIHIHSVRLP 221          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNY3 (Dihydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803) GN=dapB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.982e-29
Identity = 78/194 (40.21%), Postives = 118/194 (60.82%), Query Frame = 1
Query:   13 MEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +++ GA+D +    G+DIG V  +  PLE+PV++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  F +KAS GCLIAP  +IG +L+QQAA+ A  ++ +VEI+E   N + D PS  A + A  L+ +G+ +N    E+  T   A+G  LG   + +HS+ LP L
Sbjct:   32 LQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPVLADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGDFAEKASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKTAQMLAEMGKTFNPPAVEEKETIAGAKGG-LGPGQIPIHSIRLPGL 223          
The following BLAST results are available for this feature:
BLAST of FC923279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DAPB3_ARATH9.743e-8981.41Putative dihydrodipicolinate reductase 3, chloropl... [more]
DAPB_TRIEI4.445e-3342.49Dihydrodipicolinate reductase OS=Trichodesmium ery... [more]
DAPB_CYAP47.582e-3342.42Dihydrodipicolinate reductase OS=Cyanothece sp. (s... [more]
DAPB_ANAVT5.434e-3140.31Dihydrodipicolinate reductase OS=Anabaena variabil... [more]
DAPB_ANASP5.434e-3140.31Dihydrodipicolinate reductase OS=Anabaena sp. (str... [more]
DAPB_NOSP71.211e-3040.10Dihydrodipicolinate reductase OS=Nostoc punctiform... [more]
DAPB_MASLA1.211e-3038.50Dihydrodipicolinate reductase OS=Mastigocladus lam... [more]
DAPB_CYAP82.697e-3039.90Dihydrodipicolinate reductase OS=Cyanothece sp. (s... [more]
DAPB_CYAP73.522e-3040.00Dihydrodipicolinate reductase OS=Cyanothece sp. (s... [more]
DAPB_SYNY32.982e-2940.21Dihydrodipicolinate reductase OS=Synechocystis sp.... [more]

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Properties
Property NameValue
Genbank descriptionC31703A10EF StrClemenN Citrus clementina cDNA clone C31703A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923279 ID=FC923279; Name=FC923279; organism=Citrus clementina; type=EST; length=597bp
GAAAGCAGAGGGATGGAGGTTGCTGGCGCCATCGATTCCCATTCTGTAGG
AGAAGATATTGGAATGGTGTGTGATATGGAGCAGCCTCTGGAAATTCCTG
TAATGAGTGACCTCACAATGGTATTAGGTTCCATATCTCAGTCAAAAGCA
AGAGCAGTCGTCATTGATTTCACAGATGCTTCAACAGTTTATGACAATGT
GAAACAGGCAACAGCATTTGGAATGAGAAGCGTGGTTTACGTGCCACACA
TTCAGCTGGAGACAGTTTCAGCATTATCTGCATTCTGTGACAAGGCCAGC
ATGGGATGTCTTATTGCACCAACTCTCTCAATAGGATCTATTCTTCTCCA
GCAAGCCGCCATTTCTGCCTCCTTCCACTACAAGAATGTGGAAATTGTAG
AATCAAGGCCAAATGCAAGAGATTTTCCATCACCAGATGCAACTCAAATC
GCCAACAACCTCTCCAACCTTGGTCAGATCTACAACAGAGAAGATATTTC
AACAGACGTGAAAGCAAGGGGTCAAGTCCTGGGAGAAGATGGAGTTCGTG
TGCACAGTATGGTCCTTCCAAGGCTTCCATCTAGTACAACGGTTTAC
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