FC923301

Overview
NameFC923301
Unique NameFC923301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1097..1529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.366e-26
Identity = 56/73 (76.71%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            ESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  329 ESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 6.777e-26
Identity = 55/73 (75.34%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            +SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  324 DSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 55/73 (75.34%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            E+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  320 EAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.510e-25
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            ++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  161 DAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.363e-25
Identity = 55/73 (75.34%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            ESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  333 ESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.846e-23
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 218
            ++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  320 KAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 50/73 (68.49%), Postives = 53/73 (72.60%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 221
            ++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  331 DAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.727e-21
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 218
            ++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  351 KAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.573e-21
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 218
            ++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  350 KAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
BLAST of FC923301 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.120e-20
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 3
Query:    3 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 218
            ++A+  +KGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  347 KAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of FC923301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
G3PA_SPIOL1.366e-2676.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH6.777e-2675.34Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.156e-2575.34Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL1.510e-2573.97Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA3.363e-2575.34Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC1.846e-2368.06Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE1.196e-2268.49Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA1.727e-2165.28Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL8.573e-2163.89Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH1.120e-2062.50Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC31703D06EF StrClemenN Citrus clementina cDNA clone C31703D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923301 ID=FC923301; Name=FC923301; organism=Citrus clementina; type=EST; length=433bp
GAGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAG
CCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGC
TGTAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTT
ATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAACACTATCTTATTATG
GAACCTTTTTCCTTTGCCTGTCATTAATCATTATGCAATAAAATTCTTAC
ATTAAAGTCGAAAAAAAAAAAAAAAAAAAAAAA
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