FC923304

Overview
NameFC923304
Unique NameFC923304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:9..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.302e-103
Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MFLTRTEYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCN KAIGSGSEGADSSLQEQ+ +DLTLQEAE
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAE 193          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.416e-102
Identity = 185/193 (95.85%), Postives = 191/193 (98.96%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MFLTRTEYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIGLKTK+GVVLAVEKR+TSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA+CDLALRFGEGDEESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY ++LTLQEAE
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAE 193          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 7.028e-102
Identity = 184/193 (95.34%), Postives = 191/193 (98.96%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MFLTRTEYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG+KTKEGVVLAVEKRITSPLLEPSSVEKIMEID+HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ+ +D+TLQEAE
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAE 193          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.199e-101
Identity = 184/193 (95.34%), Postives = 191/193 (98.96%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MFLTRTEYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG+KTKEGVVLAVEKRITSPLLEPSSVEKIMEID+HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG+EESMSRPFGVSLLIAG DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ+ +DL+LQEAE
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAE 193          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.207e-77
Identity = 141/196 (71.94%), Postives = 172/196 (87.76%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MF+TR+EYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG+KTK+ VVL VEKR+TSPL+E  SVEK+ EID HIGCA+SGL ADART++EHARV+TQNHRF+Y EP  +ESTTQ++CDLALRFGE   G+E  MSRPFGV+LLIAG DE+GP LY+++PSGT+++  AKAIGSGSE A S L +++ +D+TL+EAE
Sbjct:    1 MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAE 196          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.512e-77
Identity = 145/194 (74.74%), Postives = 169/194 (87.11%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEA 654
            MFLTR+EYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y + +TL+EA
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 3.512e-77
Identity = 145/194 (74.74%), Postives = 169/194 (87.11%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEA 654
            MFLTR+EYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y + +TL+EA
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.512e-77
Identity = 145/194 (74.74%), Postives = 169/194 (87.11%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEA 654
            MFLTR+EYDRGV+TFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y + +TL+EA
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.072e-76
Identity = 140/196 (71.43%), Postives = 171/196 (87.24%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEAE 657
            MFLTR+EYDRGV+TFSPEGRLFQVEYA+EAIKLG   IG++ +EGVVLAVEKR+TSPLLEPSS++K++EID H+ CA+SGL+ADART+++HAR+ETQNHRF+Y EPM VES  Q++CDLALRFGE     EE MSRPFGV+LLIAG DE GPSLYY+DPSGTF Q +AKAIG+GSEGA ++LQE+Y + LT+ E +
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQ 193          
BLAST of FC923304 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.476e-75
Identity = 143/194 (73.71%), Postives = 166/194 (85.57%), Query Frame = 1
Query:   79 MFLTRTEYDRGVSTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYXQDLTLQEA 654
            MFLTR+EYDRGV+TFSPEGRLFQVEYAIE  KLGSTAIG++T EGV LAVEKRITSPL+EPSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LAL+FGE D +  +MSRPFGV+LL  G DE GP L++ DPSGTF QC+A+AIGS SEGA SSLQE Y +  TL+EA
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEA 194          
The following BLAST results are available for this feature:
BLAST of FC923304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
PSA5_SOYBN8.302e-10396.89Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_ORYSJ1.416e-10295.85Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5B_ARATH7.028e-10295.34Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH1.199e-10195.34Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SCHPO1.207e-7771.94Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_MOUSE3.512e-7774.74Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN3.512e-7774.74Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN3.512e-7774.74Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_DICDI5.072e-7671.43Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA5_RAT1.476e-7573.71Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC31703D12EF StrClemenN Citrus clementina cDNA clone C31703D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923304 ID=FC923304; Name=FC923304; organism=Citrus clementina; type=EST; length=659bp
GCAATTGAACTCTCGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCA
GGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAGGACTGAGT
ATGATAGAGGAGTGAGCACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTC
GAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAA
GACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCAC
TGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATGAGCATATA
GGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAACA
TGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGAGCCAATGA
CCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGT
GAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCCCTTCTTAT
TGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGATCCATCTG
GCACATTCTGGCAATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGA
GCTGACAGTTCTCTCCAAGAGCAATATNAACAGGATTTAACCCTTCAGGA
AGCAGAGGC
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