FC923307

Overview
NameFC923307
Unique NameFC923307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14435 contig Ccv1_Contig14435:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_ARATH (Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.088e-59
Identity = 108/150 (72.00%), Postives = 123/150 (82.00%), Query Frame = 2
Query:  284 MATESSESEEEGKITGGNHQLLIDDDLREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRDTFVTLFMCNCCVVN 733
            MATESSESEEEGKI+GGN++L+IDDDLREMGK AAWSVSSCKPGNGV+ LRDDNL+TYWQSDG QPHL+NI             YVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VE  + TGWV +SLSG DPR+TFV  FM    +++
Sbjct:    1 MATESSESEEEGKISGGNYKLIIDDDLREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILS 150          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_MOUSE (Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  362 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRDT 694
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +E  + +GW+++ L+ N  + T
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_HUMAN (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  362 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRDT 694
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +E  + +GW+++ L+ N  + T
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_BOVIN (Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.490e-32
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 2
Query:  362 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRDT 694
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVN+             Y D+K DESYTPSKISVR G+ FHNL+EI+ +E  + +GW+++ L+ N  + T
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNLQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_DROME (Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=CG11419 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  362 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRDTFVTLFMCNCCVVN 733
            +RE+G +A WS+SSCKPG GV  LRD+ +DTYWQSDG  PHLVNI             Y D+KLDESYTPS+IS+R+G  F++L+E++ ++  + TGWV I +   + +   +  FM    V++
Sbjct:   30 VREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRTFMLQIAVIS 151          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_DICDI (Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  368 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGND 682
            E+GK A+WSVSS KPG+GV  LRD+NLDT+WQSD  QPH + I             + D+KLDESYTP KIS++AG   H+L+EI   E  + +GW+ I LS N+
Sbjct:   27 EIGKHASWSVSSAKPGSGVEQLRDNNLDTFWQSDAQQPHHITIQFPKKCYIENLLIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFNN 131          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_SCHPO (Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe GN=apc10 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  368 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYI 664
            ++G  A W+ SS K G  +  +RDDN+DTYWQSDG+QPH ++I             Y+ + LDESYTPS + + AG GF +L+ + TV+  + TGWV++
Sbjct:   25 DIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHV 123          
BLAST of FC923307 vs. ExPASy Swiss-Prot
Match: APC10_YEAST (Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae GN=DOC1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 38/103 (36.89%), Postives = 47/103 (45.63%), Query Frame = 2
Query:  383 AAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVETCQATGWVYISLSGNDPRD 691
            A W  SS K GN V    DDN DT+WQSDG QPH ++I             +     DESY PS + V AG    + +  K +E     GWV +    N   D
Sbjct:   88 ALWKPSSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDD 190          
The following BLAST results are available for this feature:
BLAST of FC923307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APC10_ARATH3.088e-5972.00Anaphase-promoting complex subunit 10 OS=Arabidops... [more]
APC10_MOUSE3.218e-3255.86Anaphase-promoting complex subunit 10 OS=Mus muscu... [more]
APC10_HUMAN3.218e-3255.86Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
APC10_BOVIN5.490e-3254.95Anaphase-promoting complex subunit 10 OS=Bos tauru... [more]
APC10_DROME2.387e-2745.97Anaphase-promoting complex subunit 10 OS=Drosophil... [more]
APC10_DICDI1.891e-2451.43Anaphase-promoting complex subunit 10 OS=Dictyoste... [more]
APC10_SCHPO8.222e-2043.43Anaphase-promoting complex subunit 10 OS=Schizosac... [more]
APC10_YEAST1.406e-1136.89Anaphase-promoting complex subunit DOC1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionC31703E03EF StrClemenN Citrus clementina cDNA clone C31703E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923307 ID=FC923307; Name=FC923307; organism=Citrus clementina; type=EST; length=735bp
GGATTGCCGAAGCATGGTTTTGTCGTTTGTAAATAACAAACGGAGACGCC
CCCTTTAGATTCGAGGAAGTAGAATAGATCAACAACTACCCTTTCCCCAA
TAAATCCCAGCAAAATCGACATCAGTCCATCCAAAGCCATCGGAGCGGGT
TAGCATTTGCGGTTGCATTTTCTGTTAGTTGAATTATTAGCTGGAAGACG
AGACTCTTATTATGCATATCATTCGCTGAAACTTTGCTGCTTCTTCTGCA
TATGTAGAGTCAATTATTGTGTGGAATAAGCTAATGGCAACAGAGTCATC
AGAATCAGAAGAAGAAGGGAAGATCACTGGAGGAAATCATCAATTATTAA
TTGATGACGATCTTAGAGAAATGGGAAAGAAAGCTGCTTGGAGTGTCAGC
TCTTGCAAGCCTGGCAATGGCGTCTCTGCTCTTCGCGATGACAATCTCGA
TACTTATTGGCAATCGGACGGTGCTCAGCCTCATTTGGTTAATATTCAGT
TCCAGAAGAAAGTTAAGTTGCAATTAGTTGTGCTTTATGTGGATTTTAAG
CTTGATGAGAGCTATACACCTAGTAAAATCTCTGTTCGAGCAGGTGATGG
TTTTCATAACTTGAAGGAGATAAAAACTGTGGAAACTTGTCAAGCCACTG
GGTGGGTCTATATATCGTTATCTGGAAATGATCCTAGGGACACTTTTGTC
ACACTTTTTATGTGCAATTGTTGTGTTGTCAACCA
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