FC923310

Overview
NameFC923310
Unique NameFC923310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length238
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3870 contig Ccv1_Contig3870:430..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923310 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.105e-21
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 HSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGIL 186
            H IAC  NPYQDPYYGG+M AYGHQ +G+  ++GMP  R  LPL+MAQEPVYVNAKQY GIL
Sbjct:  124 HYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGIL 185
[Close]
BLAST of FC923310 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.185e-20
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 HSIACAS-NPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGIL 186
            H++  AS NPYQDPYY G+M AYGH P+G+  + GMPH+RMPLP EMAQEPV+VNAKQY  IL
Sbjct:  117 HTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAIL 179
The following BLAST results are available for this feature:
BLAST of FC923310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NFYA1_ARATH2.105e-2170.97Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA9_ARATH5.185e-2068.25Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC31703E10EF StrClemenN Citrus clementina cDNA clone C31703E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923310 ID=FC923310; Name=FC923310; organism=Citrus clementina; type=EST; length=238bp
CACTCAATTGCTTGTGCATCAAATCCATATCAGGATCCATATTATGGAGG
GATGATGGCAGCTTATGGTCATCAACCTGTGGGTTATCCTCAATTTGTTG
GAATGCCTCATGCTAGAATGCCTTTACCACTTGAGATGGCACAAGAACCT
GTTTATGTGAATGCCAAACAGTACATGGGGATTTTGAGGCGAAGACAGGC
ACGTGCTAAAGCAGAGAAAAAAAAAAAAAAAAAAAAAA
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