FC923311

Overview
NameFC923311
Unique NameFC923311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14436 contig Ccv1_Contig14436:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923311 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.896e-61
Identity = 94/158 (59.49%), Postives = 127/158 (80.38%), Query Frame = 2 
Query:  173 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKLISLHDKRTLLDPAGNPIVTITEKVFSLHEKHFVFRGASTDTKDLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTAGSVLLNR 646
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK+ S+H++  VFRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K T  SV L +
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGK 184

HSP 2 Score: 47.7506 bits (112), Expect = 1.896e-61
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:  643 QDRFTVTVYPNIDYAFIVALIVILDDI 723
            +D F+VTVYPN+DYAFI +L+VILDD+
Sbjct:  184 KDNFSVTVYPNVDYAFIASLVVILDDV 210
The following BLAST results are available for this feature:
BLAST of FC923311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH1.896e-6159.49UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC31703E12EF StrClemenN Citrus clementina cDNA clone C31703E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923311 ID=FC923311; Name=FC923311; organism=Citrus clementina; type=EST; length=735bp
GATACCAATTGGAGGTGCGAGCAAAGGCTCGTATCATATCATGGAGCAAC
CAATTACACAACACACTGCAGACCAGATGCCACAGCAACCAAACCCACAG
CAAATTCCACAGCAGCCAATTAATATTCCAGCGCCAACTCCAGCACCAAC
AATATATTCCAATCCGGTTTCGGTAATCGGCCCTCAGTATTGCCTTCCTT
ATCCCGTTGATCTATCCATCGTTAGAAAGTTTTTAACCCTCACCGATGGC
AGTTTTGCTGTCACTGATATCAATGACAATCTCATGTTCAAAGTGAAAGA
AAAACTTATAAGCCTCCATGACAAGCGGACTCTACTTGATCCTGCTGGCA
ACCCTATTGTCACCATAACAGAGAAAGTTTTTTCCTTGCACGAGAAGCAT
TTTGTATTCAGGGGGGCTAGCACAGACACTAAAGATCTTCTCTTTACTGT
GGAAAGATCTTCAGTGATCCAATTGAAGACCACTTTGAACGTCTACCTGG
CAAGTAACACCAAACAAGATGTTTGCGATTTCAAGATCAAAGGCAGCTGG
ACTGAAAAATCTTGTGTTGTATATGCTGGAGAGTCAAACACAATTGTTGC
CCAGATGCACAAAAAGACAACTGCGGGCAGTGTCTTGCTCAACAGGACAG
GTTCACTGTGACAGTTTATCCGAACATAGACTATGCGTTTATAGTAGCCC
TGATCGTGATCCTCGATGATATCACGGTGATGATG
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