FC923315

Overview
NameFC923315
Unique NameFC923315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length295
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:2..296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923315 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.394e-18
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   98 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLRADSLPTGFM 295
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLL A SLPT  M
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGM 83          
BLAST of FC923315 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   98 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLRADSLPTGFM 295
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLL A SLPT  M
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGM 84          
BLAST of FC923315 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 2
Query:   98 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLRADSLPTGFM 295
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLL A SLPTG+M
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYM 83          
BLAST of FC923315 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   98 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLRADSLPTGFM 295
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLL A SLPTG+M
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYM 84          
The following BLAST results are available for this feature:
BLAST of FC923315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UCRIA_PEA6.394e-1869.70Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.474e-1463.64Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH2.780e-1355.88Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL1.056e-1258.82Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
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Properties
Property NameValue
Genbank descriptionC31703F04EF StrClemenN Citrus clementina cDNA clone C31703F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923315 ID=FC923315; Name=FC923315; organism=Citrus clementina; type=EST; length=295bp
GGAAATAATAGTCTCACTCGGTTGCCTCCAATAATTCTCCACAATGGCTT
CCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAG
AGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCTAGGAC
CCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTA
CAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATG
AATTTGCTTCTCTTGCGTGCTGATTCTCTTCCCACTGGATTTATG
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