FC923316

Overview
NameFC923316
Unique NameFC923316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923316_ssr214 microsatellite FC923316_ssr214:214..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10705 contig Ccv1_Contig10705:1047..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT11_SOLLC (Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.119e-35
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATT 278
            PGRP+GLFMGGGGKLL AH+IQILV+ GWVSATMGPLF+ILHK KLLRIS EDEMAGMDLTRHGGFAY YH++D     G+Q+R+IEPT +T
Sbjct:  400 PGRPHGLFMGGGGKLLGAHIIQILVIIGWVSATMGPLFYILHKFKLLRISSEDEMAGMDLTRHGGFAY-YHEED--PKLGMQMRRIEPTTST 488          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT11_ARATH (Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.554e-34
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPS 284
            PGRP+GLFMGGGGKLL A +IQI+V+ GWVSATMG LFFIL K+KLLRIS EDEMAGMD+TRHGGFAY+Y DDD+     IQLR++EP + +PS
Sbjct:  400 PGRPHGLFMGGGGKLLGAQLIQIIVITGWVSATMGTLFFILKKMKLLRISSEDEMAGMDMTRHGGFAYMYFDDDE-SHKAIQLRRVEPRSPSPS 492          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT12_SOLLC (Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQS-NGIQLRKIEPTATT 278
            P RPYGLFMGGGGKLL A VIQ++V+ GWVS TMGPLF++LHK KLLRIS +DE AGMDLTRHGGFAY+YHD+D+  S  G ++ ++EPT T+
Sbjct:  409 PNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDEDEGSSMPGFKMTRVEPTNTS 501          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT11_ORYSJ (Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.270e-32
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    6 GRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGI---QLR----KIEPTATTPSS 287
            GRPYGLFMGGGGKLLAAHVIQILV+ GWVS TMGPLF+ L KL LLRIS EDE +GMDLTRHGGFAYVYHD+D+   +G+    LR    ++EP A   S+
Sbjct:  393 GRPYGLFMGGGGKLLAAHVIQILVIFGWVSCTMGPLFYGLKKLGLLRISAEDETSGMDLTRHGGFAYVYHDEDEHDKSGVGGFMLRSAQTRVEPAAAAASN 493          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT12_ARATH (Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 3
Query:    9 RPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSN--GIQLRKIEPT--ATTPS 284
            RPYGLFMGGGGKLLAA ++QI+V+ GWV+ TMGPLF+ LHK+ LLRIS EDEMAGMD+TRHGGFAY Y+D+DDV +   G    ++EPT  ++TP+
Sbjct:  414 RPYGLFMGGGGKLLAAQIVQIIVIVGWVTVTMGPLFYGLHKMNLLRISAEDEMAGMDMTRHGGFAYAYNDEDDVSTKPWGHFAGRVEPTSRSSTPT 509          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT13_ARATH (Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.339e-30
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPSSV 290
            PGRPYGLFMGGGGKLL A ++QILV+ GWVSATMG LFFIL +L LLRIS + EM GMD+TRHGGFAY+YHD+DD +S+ +      P + TP  V
Sbjct:  404 PGRPYGLFMGGGGKLLGAQLVQILVIVGWVSATMGTLFFILKRLNLLRISEQHEMQGMDMTRHGGFAYIYHDNDD-ESHRVDPGSPFPRSATPPRV 498          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT12_ORYSJ (Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.586e-29
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDD 224
            PGRPYGLFMGGGG+LL AH++ ILV+A WVS TM PLF +L+KL LLRIS EDEMAGMD TRHGGFAY YHDDD
Sbjct:  393 PGRPYGLFMGGGGRLLGAHIVVILVIAAWVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDDD 466          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT15_ARATH (Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPSSV 290
            PGR YGLFMGGGGKLL A ++QI+V+ GWVSATMG LFFIL KL LLRIS + EM GMDL  HGGFAY+YHD+DD  S G+    + P A  P +V
Sbjct:  403 PGRHYGLFMGGGGKLLGAQLVQIIVIVGWVSATMGTLFFILKKLNLLRISEQHEMRGMDLAGHGGFAYIYHDNDD-DSIGVPGSPV-PRAPNPPAV 496          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT14_ARATH (Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKI 260
            P RP+GL MGGGG+LLAAHV+QILV+ GWVS TMG LFFILHKLKLLRI  EDE+AG+D T HGG AY+Y +D+    NGI +R++
Sbjct:  411 PNRPFGLLMGGGGRLLAAHVVQILVITGWVSVTMGTLFFILHKLKLLRIPAEDEIAGVDPTSHGGLAYMYTEDE--IRNGIMVRRV 494          
BLAST of FC923316 vs. ExPASy Swiss-Prot
Match: AMT13_ORYSJ (Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    3 PGRPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQ---SNGIQLRKIEP 266
            PGRPYGLFMGGGG+LLAAH++QILV+ GWVSATMG LF++LH+  LLR+SP  EM GMD T HGGF YV  D+ + +    +  +  ++EP
Sbjct:  395 PGRPYGLFMGGGGRLLAAHIVQILVIVGWVSATMGTLFYVLHRFGLLRVSPATEMEGMDPTCHGGFGYVDEDEGERRVRAKSAAETARVEP 485          
The following BLAST results are available for this feature:
BLAST of FC923316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMT11_SOLLC4.119e-3577.17Ammonium transporter 1 member 1 OS=Solanum lycoper... [more]
AMT11_ARATH4.554e-3472.34Ammonium transporter 1 member 1 OS=Arabidopsis tha... [more]
AMT12_SOLLC3.855e-3368.82Ammonium transporter 1 member 2 OS=Solanum lycoper... [more]
AMT11_ORYSJ7.270e-3268.32Ammonium transporter 1 member 1 OS=Oryza sativa su... [more]
AMT12_ARATH8.038e-3165.63Ammonium transporter 1 member 2 OS=Arabidopsis tha... [more]
AMT13_ARATH2.339e-3065.63Ammonium transporter 1 member 3 OS=Arabidopsis tha... [more]
AMT12_ORYSJ2.586e-2978.38Ammonium transporter 1 member 2 OS=Oryza sativa su... [more]
AMT15_ARATH8.318e-2864.58Putative ammonium transporter 1 member 5 OS=Arabid... [more]
AMT14_ARATH1.086e-2767.44Ammonium transporter 1 member 4 OS=Arabidopsis tha... [more]
AMT13_ORYSJ2.676e-2659.34Ammonium transporter 1 member 3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC31703F06EF StrClemenN Citrus clementina cDNA clone C31703F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923316 ID=FC923316; Name=FC923316; organism=Citrus clementina; type=EST; length=562bp
AACCCGGAAGGCCTTACGGGCTGTTCATGGGCGGCGGCGGGAAGCTCTTG
GCCGCTCACGTGATCCAAATATTAGTTGTTGCGGGTTGGGTTAGCGCCAC
CATGGGCCCCTTGTTTTTTATTCTTCACAAGCTTAAGCTTTTGCGGATAT
CGCCCGAGGATGAGATGGCGGGTATGGACCTGACCCGGCACGGCGGGTTC
GCTTACGTTTATCATGATGATGATGATGTTCAAAGCAACGGGATTCAGTT
GAGAAAAATTGAACCCACTGCTACTACCCCATCTTCGGTTTAGTTTAGTT
GATTATTTTTAATTTTTAATTTTCTTTTCTATTTTTTGGGTTTTTTTTTG
TTTTTTAAATTGCATGTGTGGTAATGTATAAGATAGTGTAATCAAATTAG
CATTAGGGTTGGTGGATTTTAGATATGAGTGGATGGTTCGTGTAATGGGG
ATAATGAAGACTTGGACCATGATCGTTTGTTTTTTTTTCAATTCCTAATT
GTTATTCAAATCATGCCAAATGAATATTTTAATGCACAAAAAAAAAAAAA
AAAAAAAAAAAA
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